Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:47665575-47665775	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47665176..47668139-chr11:47670216..47674244,3	MCF-7	breast:
2	chr11:47663509..47666496-chr11:47787150..47790595,4	MCF-7	breast:
3	chr11:47663756..47666703-chr11:47730078..47732549,2	MCF-7	breast:
4	chr11:47662583..47667763-chr11:47735291..47739208,6	MCF-7	breast:
5	chr11:47662615..47665881-chr11:47786940..47791485,8	K562	blood:
6	chr11:47662579..47666117-chr11:47735408..47738256,8	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1064608	0.91[ASN][1000 genomes]
rs10838738	0.91[ASN][1000 genomes]
rs10838747	0.85[ASN][1000 genomes]
rs10838748	0.85[ASN][1000 genomes]
rs10838757	0.81[ASN][1000 genomes]
rs11039307	0.84[AFR][1000 genomes]
rs11039308	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039342	0.85[ASN][1000 genomes]
rs11039348	0.83[ASN][1000 genomes]
rs11602395	0.84[ASN][1000 genomes]
rs11604825	0.81[ASN][1000 genomes]
rs12361031	0.81[ASN][1000 genomes]
rs12363232	0.86[ASN][1000 genomes]
rs12419507	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12419692	0.88[ASN][1000 genomes]
rs12421210	0.82[ASN][1000 genomes]
rs12787112	0.87[ASN][1000 genomes]
rs12787646	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12794570	0.91[ASN][1000 genomes]
rs12798028	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12799623	0.84[ASN][1000 genomes]
rs34910028	0.81[ASN][1000 genomes]
rs3817334	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3817335	0.91[ASN][1000 genomes]
rs4752856	0.91[ASN][1000 genomes]
rs4752857	0.91[ASN][1000 genomes]
rs59360790	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927771	0.82[ASN][1000 genomes]
rs7947730	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11039324	FNBP4	Cis_1M	lymphoblastoid	RTeQTL
rs11039324	C1QTNF4	cis	Skin Sun Exposed Lower leg	GTEx
rs11039324	C1QTNF4	cis	Muscle Skeletal	GTEx
rs11039324	C1QTNF4	cis	Adipose Subcutaneous	GTEx
rs11039324	C1QTNF4	cis	intralobular white matter	BrainEAC

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47665000-47670000	Weak transcription	Fetal Brain Male	brain
2	chr11:47665000-47672400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:47665200-47666400	Weak transcription	Hela-S3	cervix
4	chr11:47665200-47672600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:47665600-47666000	Weak transcription	K562	blood

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