Variant report

Variant	rs11039435
Chromosome Location	chr11:47886430-47886431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11039349	0.88[AFR][1000 genomes]
rs11039383	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11039388	0.83[AFR][1000 genomes]
rs11039424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039452	1.00[AMR][1000 genomes]
rs12271799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272214	0.88[AFR][1000 genomes]
rs12273959	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275750	1.00[AMR][1000 genomes]
rs12276273	1.00[AMR][1000 genomes]
rs12282406	0.88[AFR][1000 genomes]
rs12284196	0.88[AFR][1000 genomes]
rs12287594	1.00[AMR][1000 genomes]
rs12296074	1.00[AMR][1000 genomes]
rs13377558	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1049835	chr11:47837089-47928822	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv541036	chr11:47837089-47928822	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47870800-47889400	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:47880000-47886600	Weak transcription	HSMMtube	muscle
3	chr11:47880000-47891000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:47880200-47891000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:47883000-47886600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:47883000-47887200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:47883200-47886600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:47883200-47887000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:47883600-47886600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:47883800-47886600	Enhancers	Adipose Nuclei	Adipose
11	chr11:47884000-47887400	Enhancers	Hela-S3	cervix
12	chr11:47884200-47886600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:47884400-47886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:47884400-47886600	Enhancers	HSMM	muscle
15	chr11:47884600-47886800	Enhancers	NH-A	brain
16	chr11:47884800-47886800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:47885200-47886600	Enhancers	NHLF	lung
18	chr11:47885200-47887000	Enhancers	Osteobl	bone
19	chr11:47885400-47887000	Flanking Active TSS	GM12878-XiMat	blood
20	chr11:47885400-47887000	Enhancers	K562	blood
21	chr11:47885600-47886600	Enhancers	Ovary	ovary
22	chr11:47885800-47886600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:47886000-47886600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:47886000-47886800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:47886000-47886800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:47886000-47886800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:47886000-47886800	Flanking Active TSS	A549	lung
28	chr11:47886000-47887000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:47886000-47888200	Weak transcription	Placenta	Placenta
30	chr11:47886000-47891200	Weak transcription	Spleen	Spleen
31	chr11:47886000-47891600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:47886200-47886600	Enhancers	HUVEC	blood vessel
33	chr11:47886200-47887000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:47886200-47887200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr11:47886200-47887400	Enhancers	Primary hematopoietic stem cells	blood
36	chr11:47886200-47891000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:47886200-47891200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:47886400-47886800	Active TSS	NHDF-Ad	bronchial
39	chr11:47886400-47887000	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr11:47886400-47887000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:47886400-47889200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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