Variant report

Variant	rs11039462
Chromosome Location	chr11:47955888-47955889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47955472..47956729-chr11:48130954..48132546,8	MCF-7	breast:
2	chr11:47868025..47869927-chr11:47953160..47956003,2	MCF-7	breast:
3	chr11:47955798..47956299-chr11:48002203..48003105,2	K562	blood:
4	chr11:47955684..47956212-chr11:48000981..48001494,2	MCF-7	breast:
5	chr11:47955523..47956710-chr11:48130209..48132188,17	MCF-7	breast:
6	chr11:47955553..47956701-chr11:48130593..48132313,16	K562	blood:

Variant related genes	Relation type
ENSG00000030066	Chromatin interaction
ENSG00000149177	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11039339	1.00[AFR][1000 genomes]
rs11039413	1.00[AFR][1000 genomes]
rs11039468	1.00[AFR][1000 genomes]
rs12225433	1.00[AFR][1000 genomes]
rs2046378	1.00[AFR][1000 genomes]
rs2904128	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1047490	chr11:47916708-48388686	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1044266	chr11:47929586-48276132	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv541038	chr11:47929586-48276132	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47950400-47963600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:47950600-47958800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:47950600-47959600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:47950800-47956000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:47950800-47959400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:47950800-47971800	Weak transcription	Fetal Thymus	thymus
7	chr11:47951000-47958800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:47952600-47958400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:47952600-47959000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:47953200-47958400	Weak transcription	Placenta	Placenta
11	chr11:47953400-47958400	Weak transcription	NHDF-Ad	bronchial
12	chr11:47953400-47959000	Weak transcription	NHLF	lung
13	chr11:47953400-47959600	Weak transcription	NH-A	brain
14	chr11:47953800-47958400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:47954000-47959000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:47954000-47959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:47954200-47959000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:47954200-47959000	Weak transcription	Osteobl	bone
19	chr11:47954200-47960200	Enhancers	Primary B cells from cord blood	blood
20	chr11:47954400-47959000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:47954400-47959800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:47954400-47968200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:47954800-47956000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:47955000-47956800	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:47955600-47959000	Enhancers	Hela-S3	cervix
26	chr11:47955800-47956600	Enhancers	GM12878-XiMat	blood
27	chr11:47955800-47959400	Enhancers	A549	lung

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