Variant report

Variant	rs11042488
Chromosome Location	chr11:9756358-9756359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9634288..9636670-chr11:9753675..9757139,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11042496	1.00[ASN][1000 genomes]
rs11042511	1.00[ASN][1000 genomes]
rs12420712	1.00[ASN][1000 genomes]
rs12807967	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808226	1.00[ASN][1000 genomes]
rs17268632	1.00[ASN][1000 genomes]
rs17353206	1.00[ASN][1000 genomes]
rs4910065	1.00[ASN][1000 genomes]
rs4910505	1.00[ASN][1000 genomes]
rs61876907	1.00[ASN][1000 genomes]
rs7943610	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
2	chr11:9730600-9758200	Weak transcription	Esophagus	oesophagus
3	chr11:9733600-9757000	Weak transcription	Fetal Brain Female	brain
4	chr11:9733600-9761600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:9733800-9759800	Weak transcription	Fetal Heart	heart
6	chr11:9740000-9758000	Weak transcription	Aorta	Aorta
7	chr11:9740000-9762000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:9742200-9756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:9742200-9758400	Weak transcription	Brain Substantia Nigra	brain
10	chr11:9742200-9759800	Weak transcription	Fetal Kidney	kidney
11	chr11:9742200-9779400	Weak transcription	Fetal Brain Male	brain
12	chr11:9744400-9756800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:9744600-9761400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9744800-9758000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:9745000-9775600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:9745600-9758600	Strong transcription	NHDF-Ad	bronchial
17	chr11:9747400-9757000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:9749000-9757000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:9749000-9761800	Weak transcription	Small Intestine	intestine
20	chr11:9749000-9764400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:9749000-9764400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr11:9749200-9758000	Weak transcription	Stomach Mucosa	stomach
23	chr11:9749400-9757800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:9749400-9757800	Strong transcription	HSMM	muscle
25	chr11:9749400-9758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:9749400-9758800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:9749400-9764400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:9749600-9764400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:9750000-9756800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:9750000-9757200	Strong transcription	HUVEC	blood vessel
31	chr11:9750200-9758400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:9751000-9764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:9751400-9757000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:9751400-9758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:9753000-9756600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr11:9753000-9757000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:9753200-9757000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr11:9753400-9757800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:9753800-9756400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr11:9753800-9764400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:9754000-9756400	Strong transcription	Fetal Muscle Leg	muscle
42	chr11:9754000-9756800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:9754000-9757000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:9754000-9758400	Strong transcription	Left Ventricle	heart
45	chr11:9754000-9764400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:9754200-9756600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:9754200-9757400	Strong transcription	NH-A	brain
48	chr11:9754200-9757800	Strong transcription	Osteobl	bone
49	chr11:9754200-9764400	Strong transcription	Adipose Nuclei	Adipose
50	chr11:9754400-9756600	Strong transcription	A549	lung

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