Variant report

Variant	rs11042496
Chromosome Location	chr11:9811039-9811040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1045634	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs10770061	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs10840300	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs10840301	0.94[EUR][1000 genomes]
rs10840302	0.95[EUR][1000 genomes]
rs10840304	0.82[EUR][1000 genomes]
rs10840307	0.86[EUR][1000 genomes]
rs11042488	1.00[ASN][1000 genomes]
rs11042494	0.95[EUR][1000 genomes]
rs11042495	0.95[EUR][1000 genomes]
rs11042497	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042511	1.00[ASN][1000 genomes]
rs11042559	1.00[CHB][hapmap]
rs12420712	1.00[ASN][1000 genomes]
rs12786198	0.96[EUR][1000 genomes]
rs12807967	1.00[ASN][1000 genomes]
rs12808226	1.00[ASN][1000 genomes]
rs17268632	1.00[ASN][1000 genomes]
rs17353206	1.00[ASN][1000 genomes]
rs360148	0.89[EUR][1000 genomes]
rs360149	0.90[EUR][1000 genomes]
rs3829252	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs4910065	1.00[ASN][1000 genomes]
rs4910500	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs4910501	0.95[EUR][1000 genomes]
rs4910502	0.95[EUR][1000 genomes]
rs4910503	0.95[EUR][1000 genomes]
rs4910505	0.95[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876907	1.00[ASN][1000 genomes]
rs7102804	0.93[EUR][1000 genomes]
rs7105203	0.92[EUR][1000 genomes]
rs7113459	0.93[EUR][1000 genomes]
rs7120754	0.95[EUR][1000 genomes]
rs7124706	0.93[EUR][1000 genomes]
rs7925875	0.93[EUR][1000 genomes]
rs7936721	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs7943610	1.00[ASN][1000 genomes]
rs9795085	0.93[EUR][1000 genomes]
rs9795121	0.92[EUR][1000 genomes]
rs9795122	0.92[EUR][1000 genomes]
rs9795123	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
2	chr11:9795200-9812800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr11:9797400-9821800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:9797800-9811800	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:9798600-9811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:9799200-9812000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:9799200-9812200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:9799600-9823400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:9799800-9811600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:9799800-9812000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:9799800-9812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:9799800-9812200	Strong transcription	Liver	Liver
13	chr11:9799800-9814200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:9800200-9823800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:9801600-9823800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:9803000-9823400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:9803000-9823400	Weak transcription	Psoas Muscle	Psoas
18	chr11:9803200-9811400	Weak transcription	Brain Substantia Nigra	brain
19	chr11:9803200-9828600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:9803200-9828600	Weak transcription	Gastric	stomach
21	chr11:9803200-9828800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:9803400-9811200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:9804600-9812000	Strong transcription	Fetal Lung	lung
24	chr11:9804800-9811800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:9804800-9811800	Strong transcription	Fetal Intestine Small	intestine
26	chr11:9804800-9811800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:9804800-9812000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:9805000-9811600	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr11:9805000-9811600	Strong transcription	Fetal Brain Female	brain
30	chr11:9805000-9811800	Strong transcription	Thymus	Thymus
31	chr11:9805000-9812200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:9805000-9812800	Strong transcription	HepG2	liver
33	chr11:9805000-9815600	Strong transcription	Fetal Intestine Large	intestine
34	chr11:9805200-9811800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:9805200-9815600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:9806800-9821400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:9806800-9828600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:9807200-9823200	Weak transcription	Fetal Heart	heart
39	chr11:9807800-9811800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:9807800-9811800	Strong transcription	Ovary	ovary
41	chr11:9807800-9811800	Strong transcription	NHEK	skin
42	chr11:9808200-9811600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:9808200-9811600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:9808200-9811600	Strong transcription	Brain Hippocampus Middle	brain
45	chr11:9808200-9811600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:9808200-9811600	Strong transcription	Dnd41	blood
47	chr11:9808200-9811800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:9808200-9811800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:9808200-9811800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:9808200-9811800	Strong transcription	Brain Anterior Caudate	brain

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