Variant report

Variant	rs11042551
Chromosome Location	chr11:9953075-9953076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11042504	1.00[AMR][1000 genomes]
rs11042537	1.00[AMR][1000 genomes]
rs11042538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11042544	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042546	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042587	1.00[EUR][1000 genomes]
rs11042597	1.00[EUR][1000 genomes]
rs11042600	1.00[EUR][1000 genomes]
rs12270444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290340	1.00[AMR][1000 genomes]
rs12291871	1.00[AMR][1000 genomes]
rs12294282	1.00[AMR][1000 genomes]
rs12295264	1.00[AMR][1000 genomes]
rs13377319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377352	1.00[AMR][1000 genomes]
rs56656104	1.00[EUR][1000 genomes]
rs57108291	1.00[AMR][1000 genomes]
rs57125659	1.00[AMR][1000 genomes]
rs57669768	1.00[AMR][1000 genomes]
rs58442208	1.00[EUR][1000 genomes]
rs7358421	1.00[AMR][1000 genomes]
rs7358470	1.00[AMR][1000 genomes]
rs9630162	1.00[AMR][1000 genomes]
rs9971601	1.00[AMR][1000 genomes]
rs9988844	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1041148	chr11:9927980-9954537	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
2	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
3	chr11:9929200-9966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:9943400-9980600	Weak transcription	Primary T cells from cord blood	blood
5	chr11:9944800-9961000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:9944800-9969000	Weak transcription	Ovary	ovary
7	chr11:9945000-9954000	Weak transcription	HMEC	breast
8	chr11:9945000-9967600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:9945400-9964800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:9945600-9955200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:9945600-9958400	Weak transcription	NHDF-Ad	bronchial
12	chr11:9950200-9980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:9951200-9955000	Weak transcription	Right Ventricle	heart
14	chr11:9951600-9954400	Weak transcription	Brain Angular Gyrus	brain
15	chr11:9952200-9953200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:9952600-9966600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:9952600-9968600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:9952800-9954400	Weak transcription	Placenta	Placenta
19	chr11:9952800-9954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:9952800-9954600	Weak transcription	Fetal Brain Female	brain
21	chr11:9952800-9955200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:9952800-9956000	Weak transcription	Fetal Intestine Large	intestine
23	chr11:9952800-9958400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:9952800-9967600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:9952800-9980200	Weak transcription	Aorta	Aorta
26	chr11:9952800-9980400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:9952800-9980600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:9952800-9980600	Weak transcription	Spleen	Spleen
29	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:9953000-9954400	Enhancers	HepG2	liver
31	chr11:9953000-9955000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:9953000-9956200	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:9953000-9962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:9953000-9963600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:9953000-9963600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:9953000-9963600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:9953000-9969200	Weak transcription	Fetal Intestine Small	intestine
38	chr11:9953000-9978200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:9953000-9979600	Weak transcription	Fetal Stomach	stomach
40	chr11:9953000-9980200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:9953000-9980200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:9953000-9980400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:9953000-9980400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:9953000-9980400	Weak transcription	Esophagus	oesophagus

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