Variant report

Variant	rs11042587
Chromosome Location	chr11:10028922-10028923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11042504	0.91[YRI][hapmap]
rs11042538	1.00[YRI][hapmap]
rs11042544	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042546	1.00[EUR][1000 genomes]
rs11042551	1.00[EUR][1000 genomes]
rs11042565	0.90[YRI][hapmap]
rs11042597	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042600	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042649	0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042660	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12270444	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12270596	1.00[EUR][1000 genomes]
rs12272934	0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12277094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279495	0.91[YRI][hapmap]
rs12281072	0.84[YRI][hapmap]
rs12283105	0.83[YRI][hapmap]
rs12293889	0.82[AFR][1000 genomes]
rs12295264	1.00[YRI][hapmap]
rs13377319	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13377352	0.89[YRI][hapmap]
rs13377375	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13377561	0.82[YRI][hapmap]
rs56656104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58442208	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358470	0.82[YRI][hapmap]
rs9988844	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
6	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
10	chr11:10010600-10051200	Weak transcription	Ovary	ovary
11	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
12	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:10021000-10031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:10021800-10030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10022600-10032400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:10024200-10047800	Weak transcription	Osteobl	bone
18	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel
19	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
20	chr11:10026200-10030000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr11:10026600-10030000	Weak transcription	HSMMtube	muscle
22	chr11:10026600-10030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10026800-10030200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:10027200-10029200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:10027200-10029400	ZNF genes & repeats	Fetal Muscle Leg	muscle
26	chr11:10027200-10030400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:10027400-10030000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:10027400-10030000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr11:10027600-10029400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:10027600-10030800	ZNF genes & repeats	Fetal Stomach	stomach
31	chr11:10027800-10030600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr11:10028000-10029200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:10028800-10029200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:10028800-10030600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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