Variant report

Variant	rs11042597
Chromosome Location	chr11:10066435-10066436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:10066003-10066464	H1-hESC	embryonic stem cell:	n/a	n/a
2	TAF1	chr11:10066082-10066501	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:10066207-10066486	H1-hESC	embryonic stem cell:	n/a	n/a
4	TRIM28	chr11:10066192-10066613	K562	blood:	n/a	n/a
5	TCF12	chr11:10066039-10066736	A549	lung:	n/a	n/a
6	TAF7	chr11:10066180-10066493	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr11:10066153-10066566	NB4	blood:	n/a	n/a
8	KAP1	chr11:10066083-10066709	HEK293	kidney:	n/a	n/a
9	CBX3	chr11:10066087-10066696	HCT-116	colon:	n/a	n/a
10	KAP1	chr11:10066186-10066496	K562	blood:	n/a	n/a
11	POLR2A	chr11:10066075-10066618	H1-hESC	embryonic stem cell:	n/a	n/a
12	ZNF143	chr11:10066268-10066583	Hela-S3	cervix:	n/a	n/a
13	CBX3	chr11:10066150-10066660	HCT-116	colon:	n/a	n/a
14	SETDB1	chr11:10066182-10066621	K562	blood:	n/a	n/a
15	GTF2F1	chr11:10066314-10066484	H1-hESC	embryonic stem cell:	n/a	n/a
16	CBX3	chr11:10066186-10066595	K562	blood:	n/a	n/a
17	MYC	chr11:10066329-10066544	NB4	blood:	n/a	n/a
18	SETDB1	chr11:10065979-10066757	U2OS	brain:	n/a	n/a
19	POLR2A	chr11:10065978-10066845	H1-hESC	embryonic stem cell:	n/a	n/a
20	ZNF143	chr11:10066317-10066529	K562	blood:	n/a	n/a
21	ZNF143	chr11:10066335-10066563	GM12878	blood:	n/a	n/a
22	USF1	chr11:10066237-10066503	ECC-1	luminal epithelium:	n/a	n/a
23	POLR2A	chr11:10065985-10066679	H1-hESC	embryonic stem cell:	n/a	n/a
24	TRIM28	chr11:10066272-10066486	K562	blood:	n/a	n/a
25	KAP1	chr11:10066208-10066616	U2OS	brain:	n/a	n/a
26	USF1	chr11:10066229-10066617	HCT-116	colon:	n/a	n/a
27	ZNF263	chr11:10066221-10066599	HEK293-T-REx	kidney:	n/a	n/a
28	TAF1	chr11:10066130-10066512	H1-hESC	embryonic stem cell:	n/a	n/a
29	CBX3	chr11:10066151-10066621	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
SBF2	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11042538	1.00[YRI][hapmap]
rs11042544	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042546	1.00[EUR][1000 genomes]
rs11042551	1.00[EUR][1000 genomes]
rs11042565	0.90[YRI][hapmap]
rs11042587	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042649	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042660	1.00[EUR][1000 genomes]
rs12270444	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12270596	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12272934	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs12277094	0.95[AFR][1000 genomes]
rs12279495	0.91[YRI][hapmap]
rs12281072	0.84[YRI][hapmap]
rs12283105	0.83[YRI][hapmap]
rs12293889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295264	1.00[YRI][hapmap]
rs13377319	1.00[EUR][1000 genomes]
rs13377375	1.00[EUR][1000 genomes]
rs13377561	0.82[YRI][hapmap]
rs1372813	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16907586	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56656104	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58442208	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59084464	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7358470	0.82[YRI][hapmap]
rs9988844	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10050200-10066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:10065000-10066600	ZNF genes & repeats	Dnd41	blood
3	chr11:10065000-10067000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:10065200-10067800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:10065400-10066800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr11:10065400-10067000	ZNF genes & repeats	A549	lung
7	chr11:10065600-10066600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
8	chr11:10065600-10066600	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr11:10065600-10066800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:10065800-10066800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr11:10065800-10066800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:10065800-10066800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:10065800-10067000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:10065800-10067200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr11:10066000-10066600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr11:10066000-10066600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr11:10066000-10066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:10066000-10066600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
19	chr11:10066000-10066600	ZNF genes & repeats	Hela-S3	cervix
20	chr11:10066000-10066800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10066000-10066800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:10066000-10066800	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr11:10066000-10066800	ZNF genes & repeats	Fetal Stomach	stomach
24	chr11:10066000-10067000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:10066000-10067000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:10066000-10067000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:10066000-10067000	ZNF genes & repeats	Liver	Liver
28	chr11:10066000-10067000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr11:10066000-10067800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:10066200-10066600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
31	chr11:10066200-10066600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10066200-10066600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:10066200-10066600	ZNF genes & repeats	Aorta	Aorta
34	chr11:10066200-10066600	ZNF genes & repeats	Fetal Lung	lung
35	chr11:10066200-10066600	ZNF genes & repeats	Gastric	stomach
36	chr11:10066200-10066600	ZNF genes & repeats	Pancreas	Pancrea
37	chr11:10066200-10066600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
38	chr11:10066200-10066600	ZNF genes & repeats	NHLF	lung
39	chr11:10066200-10066800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:10066200-10066800	ZNF genes & repeats	Osteobl	bone

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