Variant report

Variant	rs11042606
Chromosome Location	chr11:10091525-10091526
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10458929	0.97[ASN][1000 genomes]
rs10500717	0.92[ASN][1000 genomes]
rs10743129	0.81[ASN][1000 genomes]
rs10770092	0.82[ASN][1000 genomes]
rs10840347	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10840348	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840352	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10840359	0.94[ASN][1000 genomes]
rs10840361	0.96[ASN][1000 genomes]
rs10840362	0.96[ASN][1000 genomes]
rs10840370	0.85[ASN][1000 genomes]
rs11042589	0.90[EUR][1000 genomes]
rs11042590	0.86[AMR][1000 genomes]
rs11042591	0.86[AMR][1000 genomes]
rs11042592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042604	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11042605	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042610	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042613	0.94[ASN][1000 genomes]
rs11042624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042630	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042634	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042635	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042639	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042645	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042647	1.00[EUR][1000 genomes]
rs11042669	1.00[EUR][1000 genomes]
rs11526057	0.82[AMR][1000 genomes]
rs11530489	0.95[ASN][1000 genomes]
rs11530492	1.00[EUR][1000 genomes]
rs12221716	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12575719	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1442732	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907368	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907396	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478985	0.94[ASN][1000 genomes]
rs4529876	0.87[ASN][1000 genomes]
rs57420335	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59757006	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7114303	0.94[ASN][1000 genomes]
rs7121617	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7938788	0.91[ASN][1000 genomes]
rs7946995	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10085000-10098200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:10087800-10097800	Weak transcription	Right Atrium	heart
5	chr11:10090000-10098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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