Variant report

Variant	rs11042645
Chromosome Location	chr11:10171400-10171401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10500715	1.00[JPT][hapmap]
rs10500717	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10743129	0.87[ASN][1000 genomes]
rs10770079	1.00[JPT][hapmap]
rs10770092	0.86[ASN][1000 genomes]
rs10840330	1.00[JPT][hapmap]
rs10840333	1.00[JPT][hapmap]
rs10840334	1.00[JPT][hapmap]
rs10840347	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10840348	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10840361	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10840362	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10840370	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11042574	1.00[JPT][hapmap]
rs11042589	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11042590	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11042591	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11042592	1.00[EUR][1000 genomes]
rs11042604	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042605	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042606	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042610	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042613	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11042624	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042630	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042634	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042635	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042639	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042669	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11530489	0.81[ASN][1000 genomes]
rs11530492	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221716	0.90[EUR][1000 genomes]
rs12222953	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12283105	1.00[JPT][hapmap]
rs12575719	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1372807	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1442732	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16907368	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs16907396	0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2403226	1.00[JPT][hapmap]
rs2403227	1.00[JPT][hapmap]
rs2403229	0.88[JPT][hapmap]
rs4529876	0.82[ASN][1000 genomes]
rs4576815	1.00[JPT][hapmap]
rs4625455	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4909917	1.00[JPT][hapmap]
rs4910086	1.00[JPT][hapmap]
rs4910118	0.88[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs57420335	0.90[EUR][1000 genomes]
rs59757006	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7106914	1.00[JPT][hapmap]
rs7114303	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7121617	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7938788	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7946995	0.83[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10162400-10177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10162400-10177800	Weak transcription	NHLF	lung
4	chr11:10166800-10177600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart

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