Variant report

Variant	rs11052569
Chromosome Location	chr12:33413558-33413559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10844510	0.98[EUR][1000 genomes]
rs10844511	0.98[EUR][1000 genomes]
rs10844512	0.98[EUR][1000 genomes]
rs10844513	0.98[EUR][1000 genomes]
rs10844514	0.98[EUR][1000 genomes]
rs10844516	0.98[EUR][1000 genomes]
rs10844517	0.98[EUR][1000 genomes]
rs10844520	0.98[EUR][1000 genomes]
rs10844521	0.98[EUR][1000 genomes]
rs10844522	0.86[EUR][1000 genomes]
rs11052560	0.98[EUR][1000 genomes]
rs11052561	0.98[EUR][1000 genomes]
rs11052564	0.98[EUR][1000 genomes]
rs11052565	0.82[EUR][1000 genomes]
rs11052568	0.98[EUR][1000 genomes]
rs11052571	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11052572	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11052573	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11052574	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11052591	0.80[AFR][1000 genomes]
rs11052593	0.81[AFR][1000 genomes]
rs11833175	0.98[EUR][1000 genomes]
rs12307589	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12311492	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12314523	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12314583	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12818822	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1601143	0.80[AFR][1000 genomes]
rs28402793	0.98[ASN][1000 genomes]
rs28639801	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs34382986	1.00[ASN][1000 genomes]
rs3850976	0.82[AFR][1000 genomes]
rs4328282	0.83[ASN][1000 genomes]
rs4460899	0.80[AFR][1000 genomes]
rs57985634	0.86[ASN][1000 genomes]
rs60723095	0.98[ASN][1000 genomes]
rs6488151	0.98[EUR][1000 genomes]
rs6488152	0.98[EUR][1000 genomes]
rs67122293	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs67139562	0.80[AFR][1000 genomes]
rs7131714	0.98[EUR][1000 genomes]
rs7131884	0.98[EUR][1000 genomes]
rs7131991	0.98[EUR][1000 genomes]
rs7138215	0.98[EUR][1000 genomes]
rs7296338	0.98[EUR][1000 genomes]
rs7296488	0.98[EUR][1000 genomes]
rs7296690	0.98[EUR][1000 genomes]
rs7301298	0.98[EUR][1000 genomes]
rs7304952	0.98[EUR][1000 genomes]
rs73104535	0.87[AFR][1000 genomes]
rs7312489	0.98[EUR][1000 genomes]
rs7961215	0.81[AFR][1000 genomes]
rs7968999	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv669	chr12:33362795-33418800	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1048521	chr12:33373737-33430095	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv826317	chr12:33380271-33446428	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1035988	chr12:33399053-33699363	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv528000	chr12:33408131-33419575	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33413400-33418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links