Variant report

Variant	rs11053165
Chromosome Location	chr12:34371846-34371847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr12:34371436-34372232	MCF-7	breast:	n/a	n/a
2	RAD21	chr12:34371115-34371862	MCF-7	breast:	n/a	chr12:34371537-34371556 chr12:34371547-34371554
3	POLR2A	chr12:34371543-34372006	ECC-1	luminal epithelium:	n/a	n/a
4	RAD21	chr12:34371117-34371930	ECC-1	luminal epithelium:	n/a	chr12:34371537-34371556 chr12:34371547-34371554 chr12:34371866-34371879
5	MAX	chr12:34371359-34372171	MCF-7	breast:	n/a	n/a
6	SMC3	chr12:34371136-34372272	SK-N-SH	brain:	n/a	n/a
7	EGR1	chr12:34371698-34372197	MCF-7	breast:	n/a	chr12:34371933-34371942 chr12:34371933-34371944 chr12:34371933-34371944
8	YY1	chr12:34371387-34371865	ECC-1	luminal epithelium:	n/a	chr12:34371721-34371729 chr12:34371623-34371637
9	EGR1	chr12:34371810-34372001	K562	blood:	n/a	chr12:34371933-34371942 chr12:34371933-34371944 chr12:34371933-34371944
10	POLR2A	chr12:34371575-34372110	MCF-7	breast:	n/a	n/a
11	TCF7L2	chr12:34371306-34371999	PANC-1	pancreas:	n/a	chr12:34371452-34371466 chr12:34371612-34371626
12	RAD21	chr12:34371244-34371877	MCF-7	breast:	n/a	chr12:34371537-34371556 chr12:34371547-34371554
13	CTCF	chr12:34371800-34371950	SAEC	small airway:	n/a	n/a
14	HA-E2F1	chr12:34371415-34372094	MCF-7	breast:	n/a	n/a
15	CTCF	chr12:34371840-34371990	GM12869	blood:	n/a	n/a
16	TCF7L2	chr12:34371417-34371993	HCT-116	colon:	n/a	chr12:34371452-34371466 chr12:34371612-34371626
17	RAD21	chr12:34371263-34371888	A549	lung:	n/a	chr12:34371537-34371556 chr12:34371547-34371554 chr12:34371866-34371879
18	CTCF	chr12:34371800-34371950	GM12871	blood:	n/a	n/a
19	TCF7L2	chr12:34371366-34371937	MCF-7	breast:	n/a	chr12:34371452-34371466 chr12:34371612-34371626
20	CTCF	chr12:34371194-34372147	SK-N-SH	brain:	n/a	chr12:34371540-34371556 chr12:34371534-34371555 chr12:34371539-34371557
21	RAD21	chr12:34371298-34371853	ECC-1	luminal epithelium:	n/a	chr12:34371537-34371556 chr12:34371547-34371554
22	POLR2A	chr12:34371466-34372076	ECC-1	luminal epithelium:	n/a	n/a
23	POLR2A	chr12:34371644-34371984	MCF-7	breast:	n/a	n/a
24	YY1	chr12:34371263-34371903	ECC-1	luminal epithelium:	n/a	chr12:34371721-34371729 chr12:34371623-34371637
25	RAD21	chr12:34371110-34372212	SK-N-SH	brain:	n/a	chr12:34371537-34371556 chr12:34371547-34371554 chr12:34371866-34371879
26	RAD21	chr12:34371279-34371847	HCT-116	colon:	n/a	chr12:34371537-34371556 chr12:34371547-34371554
27	CTCF	chr12:34370847-34372220	A549	lung:	n/a	chr12:34371540-34371556 chr12:34371534-34371555 chr12:34371539-34371557
28	CTCF	chr12:34371225-34371950	MCF-7	breast:	n/a	chr12:34371540-34371556 chr12:34371534-34371555 chr12:34371539-34371557
29	RCOR1	chr12:34371489-34371885	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:34371140..34372648-chr12:127650511..127652141,3	MCF-7	breast:
2	chr12:34371158..34372658-chr9:79185159..79186851,2	K562	blood:

Variant related genes	Relation type
ENSG00000255652	TF binding region
ENSG00000241781	Chromatin interaction
ENSG00000239776	Chromatin interaction

Extended variants
information (count: 208 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10466831	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10466832	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506121	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772154	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10772155	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10772157	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10772158	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10772160	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844835	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844840	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844841	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844851	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844854	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844859	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844861	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053160	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053164	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053177	0.91[EUR][1000 genomes]
rs11053178	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053179	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053180	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11053184	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053185	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053190	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053193	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053194	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053195	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053197	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053198	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053199	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053201	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053203	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053207	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053208	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053210	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053211	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053212	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053213	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053214	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11053216	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053217	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053218	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053221	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11053222	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053223	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053224	0.88[EUR][1000 genomes]
rs11053227	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053230	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053231	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053232	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053234	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053235	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053236	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11053237	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053238	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053239	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053240	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053243	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11488831	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11494836	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11519123	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11519398	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11524949	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11524950	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610999	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614133	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11614910	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11831665	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12146843	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12296241	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12305126	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12320585	0.86[EUR][1000 genomes]
rs12367229	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12367521	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369042	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12372557	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12809868	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12814682	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12819543	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28624237	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28692887	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107854	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34287388	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34559105	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580257	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34977002	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312922	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35391785	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921157	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35933036	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975929	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3934517	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4436630	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4556639	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55685431	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912961	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55972212	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58797990	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60154889	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60749227	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6416260	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6488213	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6488214	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488215	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6488217	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6488218	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66592836	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7132576	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135634	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7137392	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7138091	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139260	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7295779	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7296061	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297334	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7298050	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7298322	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7303318	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7304515	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304519	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305306	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306053	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7306334	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306435	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306762	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308291	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7309608	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7309931	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7310237	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73103774	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310576	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7311284	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313094	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7313663	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7314510	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484362	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7485339	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488132	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488152	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488979	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7489067	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955933	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7961508	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963280	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970900	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971957	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7979240	0.89[EUR][1000 genomes]
rs7979769	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9668303	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9737833	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9739724	0.81[EUR][1000 genomes]
rs9919726	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037735	chr12:33510115-34457196	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1047430	chr12:33526355-34435009	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1040037	chr12:33526355-34457196	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1049273	chr12:33528203-34491300	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv541462	chr12:33528203-34491300	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1042712	chr12:33528204-34427733	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv541463	chr12:33528204-34427733	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
8	nsv1047392	chr12:33528403-34427593	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv541464	chr12:33528403-34427593	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv1051183	chr12:33528403-34491152	Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv541465	chr12:33528403-34491152	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv534000	chr12:33822185-34756209	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	esv2830231	chr12:33826241-34801271	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
14	nsv1040812	chr12:33863411-34854486	Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
15	nsv1051316	chr12:33956561-34428933	Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	nsv1051986	chr12:33962656-34457196	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
17	nsv917816	chr12:33967852-34854486	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	nsv1044382	chr12:33968178-34854486	Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
19	nsv558297	chr12:34020094-34757810	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
20	nsv533940	chr12:34023331-34756209	Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	nsv1045677	chr12:34024348-34854486	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
22	nsv1043754	chr12:34030026-34435009	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
23	nsv1037287	chr12:34030936-34491152	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	nsv541471	chr12:34030936-34491152	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
25	nsv915754	chr12:34052409-34756196	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
26	nsv430503	chr12:34059018-34760333	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
27	nsv918189	chr12:34089213-34854486	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	nsv1038502	chr12:34110609-34787964	Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
29	nsv520568	chr12:34111494-34436391	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
30	nsv527701	chr12:34111494-34819926	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
31	nsv1045139	chr12:34125978-34854486	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
32	nsv1036399	chr12:34160024-34854486	ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
33	nsv517511	chr12:34235603-34819926	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv558300	chr12:34235603-34854303	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
35	nsv1048561	chr12:34249802-34854486	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
36	nsv1041843	chr12:34294427-34854486	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
37	nsv1054657	chr12:34305403-34854486	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
38	esv2760262	chr12:34309494-34854498	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
39	nsv1039604	chr12:34312577-34435009	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
40	nsv1049482	chr12:34312577-34854486	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
41	nsv1037413	chr12:34314949-34468525	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
42	nsv1045752	chr12:34314949-34494809	ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
43	nsv1053679	chr12:34314949-34523671	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
44	nsv1054531	chr12:34314949-34532722	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv1041593	chr12:34314949-34533963	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
46	nsv1039404	chr12:34314949-34542077	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
47	nsv1045841	chr12:34314949-34803034	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
48	nsv1041182	chr12:34314949-34854486	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv442265	chr12:34314961-34803046	Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv1038446	chr12:34317832-34854486	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:34367200-34372400	Weak transcription	Small Intestine	intestine
2	chr12:34367400-34372400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:34367400-34372400	Weak transcription	Fetal Heart	heart
4	chr12:34367400-34372400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:34370400-34372400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr12:34370800-34372200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:34370800-34372400	Active TSS	Primary T cells from cord blood	blood
8	chr12:34370800-34372400	Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr12:34370800-34372400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr12:34370800-34372400	Active TSS	Duodenum Mucosa	Duodenum
11	chr12:34370800-34372400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr12:34371000-34372000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr12:34371000-34372000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr12:34371000-34372000	Active TSS	HepG2	liver
15	chr12:34371000-34372000	Active TSS	Osteobl	bone
16	chr12:34371000-34372200	Active TSS	Brain Cingulate Gyrus	brain
17	chr12:34371000-34372200	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr12:34371000-34372200	Active TSS	A549	lung
19	chr12:34371000-34372400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:34371000-34372400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr12:34371000-34372400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr12:34371200-34372000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:34371200-34372000	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr12:34371200-34372400	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr12:34371200-34372400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:34371200-34372400	Active TSS	Aorta	Aorta
27	chr12:34371200-34372400	Active TSS	Brain Angular Gyrus	brain
28	chr12:34371200-34372400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:34371200-34372400	Active TSS	Left Ventricle	heart
30	chr12:34371200-34372400	Active TSS	Ovary	ovary
31	chr12:34371200-34372800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr12:34371400-34372000	Active TSS	Brain Hippocampus Middle	brain
33	chr12:34371400-34372000	Active TSS	Pancreas	Pancrea
34	chr12:34371400-34372200	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr12:34371400-34372400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:34371400-34372400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr12:34371400-34372400	Active TSS	Brain Anterior Caudate	brain
38	chr12:34371400-34372400	Active TSS	Brain Substantia Nigra	brain
39	chr12:34371400-34372400	Active TSS	Right Atrium	heart
40	chr12:34371400-34372400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
41	chr12:34371400-34372400	Weak transcription	Dnd41	blood
42	chr12:34371400-34372400	Weak transcription	NHLF	lung
43	chr12:34371400-34372800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr12:34371600-34372000	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr12:34371600-34372000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:34371600-34372000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:34371600-34372000	Active TSS	Liver	Liver
48	chr12:34371600-34372000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
49	chr12:34371600-34372000	Enhancers	Fetal Thymus	thymus
50	chr12:34371600-34372000	Active TSS	Rectal Mucosa Donor 31	rectum

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