Variant report

Variant	rs11053909
Chromosome Location	chr12:10855683-10855684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:10855609-10857702	HepG2	liver:	n/a	n/a
2	POLR2A	chr12:10855587-10859335	A549	lung:	n/a	n/a
3	POLR2A	chr12:10855438-10855756	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
YBX3	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10772354	0.84[AFR][1000 genomes]
rs10845205	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845206	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10845207	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053902	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053904	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053911	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053917	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1108542	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11830560	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11830873	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11838144	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12231922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12423741	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12425492	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12581675	0.87[ASN][1000 genomes]
rs2083958	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4445727	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7136530	0.86[ASN][1000 genomes]
rs7138223	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73044637	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73044645	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7310690	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs7963875	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9668997	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10842000-10866000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:10845800-10869400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:10846400-10862400	Weak transcription	Esophagus	oesophagus
4	chr12:10846400-10868200	Strong transcription	HUVEC	blood vessel
5	chr12:10847200-10856000	Weak transcription	Primary T cells from cord blood	blood
6	chr12:10847200-10861400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:10847400-10861200	Strong transcription	HSMM	muscle
8	chr12:10847600-10858400	Weak transcription	Fetal Heart	heart
9	chr12:10847800-10868200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:10847800-10868800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:10848000-10868200	Weak transcription	Stomach Mucosa	stomach
12	chr12:10848000-10868600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr12:10848400-10868400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:10848400-10869000	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:10848600-10858600	Strong transcription	Adipose Nuclei	Adipose
16	chr12:10848600-10859000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr12:10848600-10867800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:10848600-10868400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:10848600-10868800	Strong transcription	Osteobl	bone
20	chr12:10848600-10869000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:10848800-10856200	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr12:10848800-10868400	Strong transcription	Placenta	Placenta
23	chr12:10848800-10869000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:10848800-10869200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:10848800-10869400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr12:10849000-10857600	Strong transcription	NH-A	brain
27	chr12:10849000-10859200	Strong transcription	HMEC	breast
28	chr12:10849000-10868400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:10849200-10858600	Weak transcription	Brain Substantia Nigra	brain
30	chr12:10849200-10869200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:10849200-10870000	Strong transcription	Liver	Liver
32	chr12:10849400-10865800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr12:10849400-10867200	Strong transcription	Primary hematopoietic stem cells	blood
34	chr12:10849400-10869400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:10849600-10861400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr12:10849600-10873600	Weak transcription	Brain Angular Gyrus	brain
37	chr12:10849800-10856800	Strong transcription	Fetal Kidney	kidney
38	chr12:10849800-10857400	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr12:10849800-10857800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:10849800-10859200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr12:10849800-10859600	Strong transcription	HSMMtube	muscle
42	chr12:10849800-10862000	Weak transcription	Brain Hippocampus Middle	brain
43	chr12:10849800-10862200	Strong transcription	NHEK	skin
44	chr12:10849800-10863200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr12:10849800-10867400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr12:10849800-10867800	Strong transcription	Dnd41	blood
47	chr12:10849800-10868400	Strong transcription	Hela-S3	cervix
48	chr12:10849800-10868600	Strong transcription	A549	lung
49	chr12:10849800-10869200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:10849800-10869200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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