The 2.0 version of rSNPBase

Variant report

Variant rs11054420
Chromosome Location chr12:11854885-11854886
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11827400-11879800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr12:11837200-11858600 Weak transcription Fetal Intestine Large intestine
3 chr12:11838000-11858000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr12:11838800-11872200 Weak transcription Primary T cells from cord blood blood
5 chr12:11839200-11857800 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr12:11839400-11859000 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr12:11840800-11859200 Weak transcription Fetal Kidney kidney
8 chr12:11841200-11856800 Weak transcription Primary neutrophils fromperipheralblood blood
9 chr12:11841800-11860200 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr12:11841800-11867400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr12:11844200-11864600 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr12:11846200-11858600 Weak transcription Fetal Intestine Small intestine
13 chr12:11846800-11857000 Weak transcription Primary monocytes fromperipheralblood blood
14 chr12:11847000-11859400 Weak transcription Brain Angular Gyrus brain
15 chr12:11848000-11872200 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr12:11848400-11858600 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr12:11848400-11861200 Weak transcription Primary B cells from peripheral blood blood
18 chr12:11848600-11858000 Weak transcription HSMMtube muscle
19 chr12:11848800-11859400 Weak transcription Right Ventricle heart
20 chr12:11848800-11861400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr12:11848800-11879600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr12:11849000-11859200 Weak transcription Brain Cingulate Gyrus brain
23 chr12:11849400-11855800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr12:11849400-11856800 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr12:11849400-11865000 Enhancers Breast Myoepithelial Primary Cells Breast
26 chr12:11850400-11858800 Weak transcription Thymus Thymus
27 chr12:11851200-11861000 Weak transcription Primary B cells from cord blood blood
28 chr12:11851400-11855400 Enhancers HepG2 liver
29 chr12:11851400-11858000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr12:11851600-11857000 Weak transcription Aorta Aorta
31 chr12:11851600-11857800 Weak transcription Osteobl bone
32 chr12:11852000-11855600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr12:11852600-11855000 Weak transcription Hela-S3 cervix
34 chr12:11852600-11855400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr12:11852600-11855400 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr12:11852600-11855400 Enhancers Right Atrium heart
37 chr12:11852600-11855800 Genic enhancers GM12878-XiMat blood
38 chr12:11852800-11855000 Enhancers HUES6 Cell Line embryonic stem cell
39 chr12:11852800-11857800 Weak transcription Liver Liver
40 chr12:11853000-11859200 Weak transcription Ovary ovary
41 chr12:11853000-11872000 Weak transcription Primary T helper cells fromperipheralblood blood
42 chr12:11853200-11870400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr12:11853400-11855000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr12:11853400-11855400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr12:11853600-11855000 Enhancers HUES48 Cell Line embryonic stem cell
46 chr12:11853600-11855000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
47 chr12:11853600-11855200 Enhancers H9 Cell Line embryonic stem cell
48 chr12:11853600-11855200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
49 chr12:11853600-11855400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr12:11853800-11855200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015