Variant report

Variant	rs1105687
Chromosome Location	chr13:75979376-75979377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1028793	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507830	1.00[JPT][hapmap]
rs1408928	1.00[ASN][1000 genomes]
rs17064386	1.00[ASN][1000 genomes]
rs17064454	1.00[JPT][hapmap]
rs2025620	0.82[ASN][1000 genomes]
rs2031505	1.00[JPT][hapmap]
rs2031506	1.00[JPT][hapmap]
rs4280128	1.00[ASN][1000 genomes]
rs4340196	1.00[JPT][hapmap]
rs4530013	1.00[ASN][1000 genomes]
rs4883997	0.82[ASN][1000 genomes]
rs4885295	1.00[JPT][hapmap]
rs7321494	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7990050	1.00[ASN][1000 genomes]
rs9318344	1.00[ASN][1000 genomes]
rs9530433	0.94[ASN][1000 genomes]
rs9530434	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573539	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75972800-75980000	Weak transcription	Osteobl	bone
2	chr13:75973400-75987200	Weak transcription	Gastric	stomach
3	chr13:75974400-75980200	Weak transcription	NH-A	brain
4	chr13:75975200-75981000	Weak transcription	Pancreas	Pancrea
5	chr13:75975600-75980600	Weak transcription	Right Atrium	heart
6	chr13:75976200-75982000	Enhancers	Fetal Heart	heart
7	chr13:75976600-75980800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:75976600-75981000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:75977000-75979600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:75977200-75984400	Weak transcription	Lung	lung
11	chr13:75977400-75979600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:75977400-75980000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:75977400-75980200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:75977400-75980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:75977400-75984200	Weak transcription	Left Ventricle	heart
16	chr13:75977400-75984200	Weak transcription	GM12878-XiMat	blood
17	chr13:75977400-75990600	Weak transcription	Brain Anterior Caudate	brain
18	chr13:75977600-75980000	Weak transcription	Fetal Lung	lung
19	chr13:75978000-75982000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr13:75978000-75982400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr13:75978400-75979400	Enhancers	HSMMtube	muscle
22	chr13:75978400-75980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr13:75978400-75981200	Enhancers	Fetal Kidney	kidney
24	chr13:75978400-75981800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr13:75978800-75980000	Enhancers	Ovary	ovary
26	chr13:75979000-75979800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:75979000-75979800	Enhancers	Psoas Muscle	Psoas
28	chr13:75979000-75979800	Enhancers	HSMM	muscle
29	chr13:75979000-75981000	Enhancers	Fetal Muscle Leg	muscle
30	chr13:75979200-75979400	Weak transcription	Right Ventricle	heart
31	chr13:75979200-75979800	Weak transcription	Adipose Nuclei	Adipose
32	chr13:75979200-75980200	Weak transcription	HepG2	liver

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