Variant report

No.	Distal block	Cell Line	Cell type
1	chr12:124349873..124352616-chr12:124471983..124473527,2	MCF-7	breast:
2	chr12:124344617..124346181-chr12:124350078..124352593,2	K562	blood:
3	chr12:124350568..124353635-chr12:124356736..124359633,3	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10773042	0.93[ASN][1000 genomes]
rs10773043	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10846563	0.94[ASN][1000 genomes]
rs10846565	0.93[ASN][1000 genomes]
rs10846566	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10846567	0.91[EUR][1000 genomes]
rs10846568	0.89[ASN][1000 genomes]
rs11057374	0.92[ASN][1000 genomes]
rs11057375	0.92[ASN][1000 genomes]
rs11057381	0.92[EUR][1000 genomes]
rs11057383	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11057385	0.83[ASN][1000 genomes]
rs12228611	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1882488	0.86[ASN][1000 genomes]
rs1882489	0.90[EUR][1000 genomes]
rs1922257	0.94[ASN][1000 genomes]
rs1922258	0.91[EUR][1000 genomes]
rs4930727	0.88[EUR][1000 genomes]
rs7138100	0.93[ASN][1000 genomes]
rs7297429	0.91[EUR][1000 genomes]
rs7300037	0.87[EUR][1000 genomes]
rs7300162	0.90[ASN][1000 genomes]
rs7313897	0.92[EUR][1000 genomes]
rs7314963	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7959043	0.91[ASN][1000 genomes]
rs7960854	0.87[ASN][1000 genomes]
rs7961179	0.87[ASN][1000 genomes]
rs7962016	0.91[ASN][1000 genomes]
rs9669530	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124331400-124352800	Weak transcription	Fetal Brain Female	brain

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