Variant report

Variant	rs1106107
Chromosome Location	chr4:81953745-81953746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10031561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138132	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1353386	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1353387	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1390319	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1390320	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546156	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1994990	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055178	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2868126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663564	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81951000-81954800	Active TSS	Duodenum Mucosa	Duodenum
2	chr4:81951200-81954200	Active TSS	Ovary	ovary
3	chr4:81951200-81955400	Active TSS	Rectal Smooth Muscle	rectum
4	chr4:81951800-81954200	Bivalent/Poised TSS	Fetal Lung	lung
5	chr4:81953200-81954000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr4:81953200-81954800	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:81953200-81955200	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr4:81953200-81955400	Active TSS	Fetal Stomach	stomach
9	chr4:81953200-81956200	Active TSS	Stomach Smooth Muscle	stomach
10	chr4:81953400-81953800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
11	chr4:81953400-81953800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr4:81953400-81954000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr4:81953400-81954000	Flanking Active TSS	Fetal Intestine Large	intestine
14	chr4:81953400-81954800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:81953400-81954800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr4:81953400-81955400	Active TSS	Brain Germinal Matrix	brain
17	chr4:81953600-81953800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
18	chr4:81953600-81953800	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr4:81953600-81954000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr4:81953600-81954000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr4:81953600-81954200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr4:81953600-81954800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr4:81953600-81955000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
24	chr4:81953600-81955000	Active TSS	Primary B cells from cord blood	blood
25	chr4:81953600-81955400	Active TSS	Colon Smooth Muscle	Colon

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