Variant report

Variant	rs11066
Chromosome Location	chr2:33809294-33809295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33808062..33809636-chr2:33842374..33844357,2	K562	blood:
2	chr2:33808414..33811833-chr2:33812334..33814725,3	K562	blood:
3	chr2:33259670..33261412-chr2:33809154..33810686,2	MCF-7	breast:
4	chr2:33808678..33811896-chr2:33820806..33824783,4	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10168254	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10173763	0.86[JPT][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap]
rs10197783	0.86[JPT][hapmap]
rs1349119	0.92[ASN][1000 genomes]
rs1375198	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1375199	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs1448559	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2367811	0.90[JPT][hapmap]
rs3023	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4670217	0.90[ASN][1000 genomes]
rs6707694	0.83[EUR][1000 genomes]
rs6708570	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6718639	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6740336	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6757234	0.90[JPT][hapmap]
rs723241	0.83[CEU][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11066	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
3	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
5	chr2:33781200-33809800	Weak transcription	Gastric	stomach
6	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
7	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:33789400-33809400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:33797600-33810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:33800800-33809800	Weak transcription	NHEK	skin
12	chr2:33802200-33809800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:33802400-33809400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:33802800-33809400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:33802800-33809600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:33802800-33809800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:33802800-33809800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:33803000-33809600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:33803000-33809800	Weak transcription	Ovary	ovary
21	chr2:33803000-33810000	Weak transcription	Brain Angular Gyrus	brain
22	chr2:33803400-33809800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:33803600-33809800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr2:33803800-33809800	Weak transcription	Esophagus	oesophagus
25	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
26	chr2:33805000-33809800	Weak transcription	Small Intestine	intestine
27	chr2:33805200-33810000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:33805600-33809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:33805600-33809800	Weak transcription	Lung	lung
30	chr2:33806400-33809800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:33806600-33809800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr2:33806600-33810000	Weak transcription	Fetal Kidney	kidney
33	chr2:33807000-33809800	Weak transcription	Spleen	Spleen
34	chr2:33807000-33811600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:33807200-33809400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
38	chr2:33807200-33809400	Weak transcription	Brain Germinal Matrix	brain
39	chr2:33807400-33810000	Weak transcription	HMEC	breast
40	chr2:33807400-33810600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr2:33807400-33814000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
43	chr2:33807600-33809800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr2:33807600-33812800	Strong transcription	NHLF	lung
45	chr2:33807600-33813800	Strong transcription	HSMM	muscle
46	chr2:33807600-33821000	Strong transcription	NH-A	brain
47	chr2:33807800-33812400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
49	chr2:33808000-33809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr2:33808000-33809800	Weak transcription	Colonic Mucosa	Colon

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