Variant report

Variant	rs11068548
Chromosome Location	chr12:118013283-118013284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10850876	1.00[ASN][1000 genomes]
rs10850878	1.00[ASN][1000 genomes]
rs10850879	1.00[ASN][1000 genomes]
rs11068607	1.00[ASN][1000 genomes]
rs11068608	1.00[AFR][1000 genomes]
rs12312244	1.00[ASN][1000 genomes]
rs12369419	1.00[CHB][hapmap]
rs2393243	1.00[ASN][1000 genomes]
rs28583752	1.00[ASN][1000 genomes]
rs56178407	1.00[ASN][1000 genomes]
rs618299	1.00[ASN][1000 genomes]
rs7294572	1.00[ASN][1000 genomes]
rs7311197	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117975000-118018200	Weak transcription	HUVEC	blood vessel
2	chr12:118005400-118018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:118009600-118018200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:118010400-118017400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:118013200-118013400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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