Variant report

Variant	rs11068623
Chromosome Location	chr12:118118458-118118459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1002231	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10850884	0.97[EUR][1000 genomes]
rs11068616	0.87[EUR][1000 genomes]
rs11068617	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11068624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068625	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305827	0.91[ASN][1000 genomes]
rs12308097	0.88[EUR][1000 genomes]
rs12309599	0.88[EUR][1000 genomes]
rs488999	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs492479	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs55718099	0.83[ASN][1000 genomes]
rs597780	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598178	0.85[AMR][1000 genomes]
rs598670	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657724	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73211999	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73213813	0.83[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118105400-118118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:118110200-118122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:118117200-118119400	Enhancers	HUVEC	blood vessel
4	chr12:118117400-118118600	Enhancers	NH-A	brain
5	chr12:118117400-118118800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:118117400-118118800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:118117400-118118800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:118117400-118118800	Enhancers	A549	lung
9	chr12:118117400-118119000	Enhancers	NHDF-Ad	bronchial
10	chr12:118117600-118118600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:118117600-118118600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr12:118117600-118118800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:118117800-118118600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:118117800-118118800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:118117800-118119000	Enhancers	Osteobl	bone
16	chr12:118118000-118118800	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links