Variant report

Variant	rs11068624
Chromosome Location	chr12:118119270-118119271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1002231	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10850884	0.97[EUR][1000 genomes]
rs11068616	0.87[EUR][1000 genomes]
rs11068617	1.00[CEU][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11068623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305827	0.91[ASN][1000 genomes]
rs12308097	0.86[EUR][1000 genomes]
rs12309599	0.86[EUR][1000 genomes]
rs1446425	0.86[GIH][hapmap]
rs488999	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs492479	0.95[CEU][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs55718099	0.83[ASN][1000 genomes]
rs597780	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598178	0.87[AMR][1000 genomes]
rs598670	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657724	0.95[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs73211999	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73213813	0.83[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118110200-118122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:118117200-118119400	Enhancers	HUVEC	blood vessel
3	chr12:118118600-118121400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:118118600-118122400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:118118600-118122400	Weak transcription	NH-A	brain
6	chr12:118118600-118122600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:118118800-118119400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:118118800-118119400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr12:118118800-118121400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr12:118118800-118121400	Weak transcription	A549	lung
11	chr12:118118800-118121800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:118118800-118122200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:118118800-118122600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:118118800-118122800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:118119000-118121400	Weak transcription	NHDF-Ad	bronchial
16	chr12:118119000-118122400	Weak transcription	Osteobl	bone
17	chr12:118119200-118119400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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