Variant report

Variant	rs11070865
Chromosome Location	chr15:52025739-52025740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51997906..52000590-chr15:52024148..52026004,2	MCF-7	breast:
2	chr15:52017571..52019095-chr15:52024523..52026773,2	K562	blood:
3	chr15:52022549..52025740-chr15:52026646..52031094,6	K562	blood:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 182 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap];0.84[YRI][hapmap];0.89[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs10444823	0.81[AMR][1000 genomes]
rs10444824	0.86[EUR][1000 genomes]
rs10444825	0.87[EUR][1000 genomes]
rs10775145	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11049	1.00[CEU][hapmap]
rs11070866	0.94[EUR][1000 genomes]
rs11070867	0.94[EUR][1000 genomes]
rs11070868	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11070869	0.88[EUR][1000 genomes]
rs1133883	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs11630084	0.85[AMR][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11630943	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11631858	0.83[EUR][1000 genomes]
rs11632106	0.84[AMR][1000 genomes]
rs11636345	0.86[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs11636869	0.83[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs11638766	0.85[AMR][1000 genomes]
rs11638820	0.86[GIH][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes]
rs12050524	0.83[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap]
rs12903500	0.96[EUR][1000 genomes]
rs12903707	0.86[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs12904413	0.88[EUR][1000 genomes]
rs12904900	0.87[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs12912928	0.83[EUR][1000 genomes]
rs12913583	0.83[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap]
rs12915568	1.00[CEU][hapmap]
rs12917133	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs1350174	0.87[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs1545602	0.85[AMR][1000 genomes]
rs17526463	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs17610862	0.88[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1811326	0.84[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs1840708	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1902430	0.86[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs1972689	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.90[CHB][hapmap]
rs2007335	1.00[CEU][hapmap]
rs2007355	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs2009972	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs2010026	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap]
rs2014638	0.90[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs2034856	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2034857	0.85[GIH][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes]
rs2034858	0.86[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs2052705	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2052706	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs2052708	1.00[CEU][hapmap]
rs2052709	1.00[CEU][hapmap]
rs2077743	0.86[GIH][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs2303443	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs2414116	0.85[GIH][hapmap]
rs2414117	0.81[AMR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap]
rs2433221	0.96[CEU][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap]
rs2436655	1.00[CEU][hapmap]
rs2436656	1.00[CEU][hapmap]
rs2441780	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs2448946	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap]
rs2448950	1.00[CEU][hapmap]
rs2554314	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs2554332	0.90[CHB][hapmap]
rs2554336	0.86[GIH][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap]
rs2554348	0.92[CEU][hapmap];0.80[CHB][hapmap]
rs2554349	1.00[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap]
rs2570224	0.81[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap]
rs2570228	0.86[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs2570239	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs2570241	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2570252	0.90[CHB][hapmap]
rs2570253	0.90[CHB][hapmap]
rs2570258	0.86[GIH][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap]
rs2593170	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs2593173	1.00[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap]
rs2593181	0.85[CEU][hapmap]
rs2623259	0.89[CHB][hapmap]
rs2623271	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs2623281	1.00[CEU][hapmap]
rs2623282	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2623283	1.00[CEU][hapmap]
rs28699115	0.97[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap]
rs2912187	1.00[CEU][hapmap]
rs2912189	1.00[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap]
rs2916169	1.00[CEU][hapmap]
rs2916172	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs2916176	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs2929423	1.00[CEU][hapmap]
rs2929424	1.00[CEU][hapmap]
rs2929425	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs2929426	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs2959285	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs2959298	1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap]
rs2959299	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs3088312	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34504520	0.86[EUR][1000 genomes]
rs35270232	0.83[EUR][1000 genomes]
rs35391204	0.99[EUR][1000 genomes]
rs35823585	0.86[EUR][1000 genomes]
rs3751596	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs3794532	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs3794534	0.81[AMR][1000 genomes]
rs3794535	0.86[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs3794536	0.81[AMR][1000 genomes]
rs3898905	0.99[EUR][1000 genomes]
rs4238383	0.86[GIH][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes]
rs4365237	0.92[EUR][1000 genomes]
rs4502160	0.85[AMR][1000 genomes]
rs4622456	0.81[AMR][1000 genomes]
rs4774602	0.86[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs4775978	0.81[AMR][1000 genomes]
rs4775982	0.81[AMR][1000 genomes]
rs4775983	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs56148956	0.86[EUR][1000 genomes]
rs56185947	0.82[EUR][1000 genomes]
rs6493518	0.85[AMR][1000 genomes]
rs6493519	0.81[AMR][1000 genomes]
rs6493520	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6493523	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs6493525	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs689884	0.91[GIH][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes]
rs7162176	0.94[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap]
rs7163176	0.81[AMR][1000 genomes]
rs7163541	1.00[CEU][hapmap]
rs7164961	0.86[EUR][1000 genomes]
rs7165585	0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs7166110	0.85[AMR][1000 genomes]
rs7166962	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7168659	1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7170091	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7170910	0.80[EUR][1000 genomes]
rs7171459	0.81[AMR][1000 genomes]
rs7171516	0.85[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7173375	0.86[AMR][1000 genomes]
rs7174497	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs7174808	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs7175017	0.91[EUR][1000 genomes]
rs7178166	0.92[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7178940	0.81[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7181553	0.91[GIH][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes]
rs726158	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs8024081	0.82[AMR][1000 genomes]
rs8024088	0.81[AMR][1000 genomes]
rs8024585	0.83[EUR][1000 genomes]
rs8024589	0.81[AMR][1000 genomes]
rs8025069	0.92[EUR][1000 genomes]
rs8026521	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8028258	0.89[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs8028486	0.83[EUR][1000 genomes]
rs8028890	0.81[AMR][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs8031045	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs8033433	0.81[EUR][1000 genomes]
rs8035126	0.81[EUR][1000 genomes]
rs8035173	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8038344	1.00[CEU][hapmap]
rs8040975	0.92[EUR][1000 genomes]
rs8040986	0.99[EUR][1000 genomes]
rs8041268	0.81[AMR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11070865	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
3	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:52019000-52028200	Weak transcription	Brain Substantia Nigra	brain
5	chr15:52020000-52028800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:52020200-52028000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:52020200-52029000	Weak transcription	NH-A	brain
8	chr15:52020400-52028000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:52022400-52026000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:52023600-52028200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:52024200-52026200	Enhancers	Psoas Muscle	Psoas
12	chr15:52024200-52028000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:52024200-52028000	Weak transcription	Hela-S3	cervix
14	chr15:52024200-52028400	Flanking Active TSS	GM12878-XiMat	blood
15	chr15:52024400-52026400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:52024400-52026800	Enhancers	Spleen	Spleen
17	chr15:52024400-52027800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr15:52024400-52027800	Enhancers	Brain Anterior Caudate	brain
19	chr15:52024400-52028000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:52024400-52028400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:52024400-52028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:52024400-52028400	Enhancers	Fetal Thymus	thymus
23	chr15:52024400-52028400	Enhancers	Thymus	Thymus
24	chr15:52024400-52028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:52024400-52028800	Weak transcription	Right Ventricle	heart
26	chr15:52024600-52026400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:52024600-52026800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:52024600-52026800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:52024600-52027600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:52024600-52027600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr15:52024600-52027600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr15:52024600-52027600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:52024600-52027800	Enhancers	Primary hematopoietic stem cells	blood
34	chr15:52024600-52027800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:52024600-52027800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr15:52024600-52028000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr15:52024600-52028000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr15:52024600-52028200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr15:52024600-52028200	Weak transcription	NHDF-Ad	bronchial
40	chr15:52024600-52028200	Weak transcription	NHLF	lung
41	chr15:52024600-52028400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:52024600-52028400	Weak transcription	Aorta	Aorta
43	chr15:52024600-52028400	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:52024600-52028400	Weak transcription	Gastric	stomach
45	chr15:52024600-52028400	Weak transcription	NHEK	skin
46	chr15:52024600-52028600	Weak transcription	Fetal Stomach	stomach
47	chr15:52024600-52028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:52024600-52028800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:52024600-52028800	Weak transcription	Osteobl	bone
50	chr15:52024600-52029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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