Variant report

Variant	rs1107771
Chromosome Location	chr3:142801865-142801866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142799728..142802020-chr3:142842393..142844077,2	K562	blood:
2	chr3:142801559..142805670-chr3:142819651..142821823,3	K562	blood:
3	chr3:142800593..142805495-chr3:142835136..142839068,6	K562	blood:

Variant related genes	Relation type
ENSG00000175040	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13322379	0.86[EUR][1000 genomes]
rs13322528	0.86[EUR][1000 genomes]
rs13325630	1.00[EUR][1000 genomes]
rs16852899	1.00[EUR][1000 genomes]
rs3821646	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58531834	1.00[EUR][1000 genomes]
rs59540153	1.00[EUR][1000 genomes]
rs6764683	0.86[EUR][1000 genomes]
rs6771415	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782124	1.00[EUR][1000 genomes]
rs6797880	1.00[EUR][1000 genomes]
rs6805721	1.00[EUR][1000 genomes]
rs6806835	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72990813	1.00[EUR][1000 genomes]
rs72992555	0.86[EUR][1000 genomes]
rs7646915	1.00[EUR][1000 genomes]
rs9289653	1.00[EUR][1000 genomes]
rs9839114	1.00[EUR][1000 genomes]
rs9842812	1.00[EUR][1000 genomes]
rs9868064	1.00[EUR][1000 genomes]
rs9871843	1.00[EUR][1000 genomes]
rs9876889	1.00[EUR][1000 genomes]
rs9877143	0.86[EUR][1000 genomes]
rs9881229	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9881390	1.00[EUR][1000 genomes]
rs9882184	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990198	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1004682	chr3:142768867-142804154	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142798800-142803600	Enhancers	K562	blood
2	chr3:142799000-142803800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:142800600-142802200	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:142800600-142802200	Flanking Active TSS	GM12878-XiMat	blood
5	chr3:142800600-142804600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:142800800-142802000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:142800800-142802200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:142801400-142802200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:142801600-142802000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:142801600-142802000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:142801600-142803600	Enhancers	Monocytes-CD14+_RO01746	blood

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