Variant report
| Variant | rs11081687 |
|---|---|
| Chromosome Location | chr18:28896207-28896208 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10468901 | 0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2114270 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2303465 | 0.81[CEU][hapmap] |
| rs2912316 | 0.86[YRI][hapmap] |
| rs2912334 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2912335 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4399610 | 0.81[CEU][hapmap] |
| rs6506917 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7229263 | 0.92[CEU][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7236327 | 0.81[CEU][hapmap] |
| rs8095423 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs930963 | 0.81[CEU][hapmap] |
| rs977434 | 0.81[CEU][hapmap] |
| rs9949912 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9952617 | 0.80[ASN][1000 genomes] |
| rs9953985 | 0.81[ASN][1000 genomes] |
| rs9965256 | 0.92[CEU][hapmap];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066692 | chr18:28856066-29190505 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv543674 | chr18:28856066-29190505 | Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
