Variant report

Variant	rs1108528
Chromosome Location	chr1:94206162-94206163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489605	0.93[GIH][hapmap];0.83[TSI][hapmap]
rs1108527	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11164994	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12239830	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1467129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17100397	0.81[EUR][1000 genomes]
rs17304770	0.82[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs1877605	0.82[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes]
rs2223908	0.84[EUR][1000 genomes]
rs4526623	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs57870303	0.86[EUR][1000 genomes]
rs58410484	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61425457	0.86[EUR][1000 genomes]
rs61781048	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61781049	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61781051	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61781053	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61781054	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61781055	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61781056	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61781057	0.84[EUR][1000 genomes]
rs61782398	0.86[EUR][1000 genomes]
rs61782399	0.86[EUR][1000 genomes]
rs61782400	0.84[EUR][1000 genomes]
rs61782403	0.86[EUR][1000 genomes]
rs61782404	0.84[EUR][1000 genomes]
rs61782405	0.84[EUR][1000 genomes]
rs61782410	0.81[EUR][1000 genomes]
rs61782413	0.84[EUR][1000 genomes]
rs61782450	0.81[EUR][1000 genomes]
rs61782451	0.81[EUR][1000 genomes]
rs6674149	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72721074	0.87[ASN][1000 genomes]
rs72723114	0.86[EUR][1000 genomes]
rs72723118	0.81[EUR][1000 genomes]
rs72723125	0.84[EUR][1000 genomes]
rs72723138	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72723157	0.84[EUR][1000 genomes]
rs72723165	0.84[EUR][1000 genomes]
rs72723169	0.81[EUR][1000 genomes]
rs7523682	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs871436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1108528	GCLM	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94199000-94207000	Enhancers	HSMM	muscle
2	chr1:94199400-94217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:94200200-94207000	Enhancers	NHDF-Ad	bronchial
4	chr1:94201200-94206200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:94202600-94206800	Enhancers	NHLF	lung
6	chr1:94203000-94206800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:94203200-94206800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:94203400-94206600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:94203400-94206800	Enhancers	Placenta	Placenta
10	chr1:94203600-94206800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:94203800-94207000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:94203800-94207000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr1:94204000-94206200	Enhancers	NHEK	skin
14	chr1:94204000-94207000	Enhancers	Adipose Nuclei	Adipose
15	chr1:94204000-94207000	Enhancers	Fetal Muscle Leg	muscle
16	chr1:94204000-94208200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:94204400-94206800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:94204400-94206800	Enhancers	Fetal Muscle Trunk	muscle
19	chr1:94204800-94206200	Weak transcription	Psoas Muscle	Psoas
20	chr1:94204800-94206800	Enhancers	HSMMtube	muscle
21	chr1:94204800-94207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:94205000-94209400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:94205400-94206800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:94205400-94208000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:94205600-94206800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:94205600-94207000	Enhancers	Fetal Lung	lung
27	chr1:94205600-94207000	Enhancers	Fetal Stomach	stomach
28	chr1:94205800-94206200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:94205800-94206200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr1:94205800-94206200	Enhancers	Spleen	Spleen
31	chr1:94205800-94206400	Genic enhancers	Right Atrium	heart
32	chr1:94205800-94206600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr1:94205800-94206600	Enhancers	Right Ventricle	heart
34	chr1:94205800-94206600	Enhancers	NH-A	brain
35	chr1:94205800-94206800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:94205800-94206800	Enhancers	Left Ventricle	heart
37	chr1:94205800-94206800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr1:94205800-94207000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:94205800-94209200	Enhancers	HepG2	liver
40	chr1:94206000-94206600	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr1:94206000-94206800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:94206000-94206800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:94206000-94206800	Enhancers	Brain Angular Gyrus	brain
44	chr1:94206000-94206800	Enhancers	Fetal Kidney	kidney
45	chr1:94206000-94206800	Enhancers	Lung	lung
46	chr1:94206000-94206800	Enhancers	Ovary	ovary
47	chr1:94206000-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:94206000-94212600	Weak transcription	HMEC	breast

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