Variant report

Variant	rs1108542
Chromosome Location	chr12:10850077-10850078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10848961..10850495-chr12:10856877..10858916,2	K562	blood:

Variant related genes	Relation type
ENSG00000060138	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10845205	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845206	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs10845207	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11053904	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11053909	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053911	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053914	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053917	0.92[ASN][1000 genomes]
rs11830560	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11830873	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11838144	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12231922	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12423741	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12425492	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12581675	0.89[ASN][1000 genomes]
rs2083958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4445727	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7136530	0.87[ASN][1000 genomes]
rs7138223	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73044637	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73044645	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7310690	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[ASN][1000 genomes]
rs7315801	0.90[CHD][hapmap]
rs7963875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9668997	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10834600-10853800	Weak transcription	Pancreas	Pancrea
2	chr12:10836800-10851200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:10842000-10866000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:10842800-10850800	Weak transcription	Aorta	Aorta
5	chr12:10843000-10850800	Weak transcription	Ovary	ovary
6	chr12:10843000-10853600	Weak transcription	Right Ventricle	heart
7	chr12:10844000-10850600	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:10845200-10850800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:10845200-10854400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:10845600-10853800	Weak transcription	Fetal Intestine Small	intestine
11	chr12:10845800-10869400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:10846400-10850800	Weak transcription	Fetal Stomach	stomach
13	chr12:10846400-10853600	Weak transcription	Lung	lung
14	chr12:10846400-10854200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:10846400-10862400	Weak transcription	Esophagus	oesophagus
16	chr12:10846400-10868200	Strong transcription	HUVEC	blood vessel
17	chr12:10846800-10853200	Weak transcription	Small Intestine	intestine
18	chr12:10847000-10850400	Weak transcription	Fetal Intestine Large	intestine
19	chr12:10847200-10850800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:10847200-10850800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:10847200-10851000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:10847200-10853800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:10847200-10853800	Strong transcription	NHLF	lung
24	chr12:10847200-10856000	Weak transcription	Primary T cells from cord blood	blood
25	chr12:10847200-10861400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:10847400-10850600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr12:10847400-10853600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:10847400-10861200	Strong transcription	HSMM	muscle
29	chr12:10847600-10850600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr12:10847600-10858400	Weak transcription	Fetal Heart	heart
31	chr12:10847800-10851000	Weak transcription	K562	blood
32	chr12:10847800-10853200	Weak transcription	Colonic Mucosa	Colon
33	chr12:10847800-10853800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr12:10847800-10868200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:10847800-10868800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr12:10848000-10851600	Strong transcription	Left Ventricle	heart
37	chr12:10848000-10851800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr12:10848000-10853400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr12:10848000-10853800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:10848000-10868200	Weak transcription	Stomach Mucosa	stomach
41	chr12:10848000-10868600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr12:10848200-10850800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr12:10848400-10854400	Weak transcription	Gastric	stomach
44	chr12:10848400-10868400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr12:10848400-10869000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:10848600-10851000	Weak transcription	HepG2	liver
47	chr12:10848600-10851600	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:10848600-10853600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:10848600-10853600	Strong transcription	NHDF-Ad	bronchial
50	chr12:10848600-10854600	Strong transcription	Primary B cells from cord blood	blood

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