Variant report

Variant	rs11097123
Chromosome Location	chr4:87807101-87807102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10011798	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10015121	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10021020	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10034336	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11097124	0.96[ASN][1000 genomes]
rs11097125	0.89[EUR][1000 genomes]
rs12503045	0.89[EUR][1000 genomes]
rs12507165	0.89[EUR][1000 genomes]
rs12641570	0.89[EUR][1000 genomes]
rs13115795	0.80[ASN][1000 genomes]
rs13120981	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13137483	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1374935	0.90[EUR][1000 genomes]
rs1868244	0.89[EUR][1000 genomes]
rs2121871	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2594274	0.87[EUR][1000 genomes]
rs2594283	0.86[EUR][1000 genomes]
rs2705629	0.88[EUR][1000 genomes]
rs28446826	0.80[AMR][1000 genomes]
rs28716151	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2904148	0.83[EUR][1000 genomes]
rs2904150	0.90[EUR][1000 genomes]
rs35428486	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4235082	0.88[EUR][1000 genomes]
rs55889191	0.87[EUR][1000 genomes]
rs56062410	0.83[EUR][1000 genomes]
rs56201068	0.81[ASN][1000 genomes]
rs67758970	0.89[EUR][1000 genomes]
rs6823051	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6843070	0.89[EUR][1000 genomes]
rs6846822	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87801600-87811800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:87801800-87808600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:87803200-87811800	Weak transcription	NHEK	skin
4	chr4:87804200-87812600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:87806000-87808600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:87806600-87808600	Weak transcription	Placenta	Placenta
7	chr4:87806800-87811800	Weak transcription	Fetal Lung	lung
8	chr4:87806800-87812000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:87806800-87812600	Weak transcription	Adipose Nuclei	Adipose
10	chr4:87806800-87813000	Weak transcription	Left Ventricle	heart
11	chr4:87807000-87808800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links