Variant report

Variant	rs11098495
Chromosome Location	chr4:120157134-120157135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:120155653..120158497-chr4:120158665..120160752,2	K562	blood:
2	chr4:120132950..120135145-chr4:120157017..120160702,4	MCF-7	breast:
3	chr4:120133844..120135886-chr4:120156323..120158493,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178636	Chromatin interaction
ENSG00000145390	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10001498	1.00[EUR][1000 genomes]
rs10004387	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10009609	0.93[AFR][1000 genomes]
rs10019019	0.88[AFR][1000 genomes]
rs12331524	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28472287	1.00[EUR][1000 genomes]
rs28624772	1.00[EUR][1000 genomes]
rs4257639	1.00[EUR][1000 genomes]
rs56049207	0.84[AFR][1000 genomes]
rs59511625	1.00[EUR][1000 genomes]
rs6814682	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6829732	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72910601	1.00[EUR][1000 genomes]
rs72912491	0.84[AFR][1000 genomes]
rs7668448	1.00[EUR][1000 genomes]
rs7682413	1.00[EUR][1000 genomes]
rs9991582	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	esv2763386	chr4:120143861-120186968	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv966480	chr4:120144708-120160847	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120134800-120170000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:120135000-120170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:120135000-120195800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:120135200-120163600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:120135200-120176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:120135200-120176200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:120135400-120159000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:120135400-120194600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:120135600-120173800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:120136200-120219200	Weak transcription	Brain Angular Gyrus	brain
11	chr4:120139400-120165800	Weak transcription	Fetal Kidney	kidney
12	chr4:120140600-120167400	Weak transcription	Colonic Mucosa	Colon
13	chr4:120140800-120158800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:120141000-120158800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:120141000-120192400	Weak transcription	Hela-S3	cervix
16	chr4:120143000-120167200	Weak transcription	Placenta	Placenta
17	chr4:120143000-120176200	Weak transcription	Esophagus	oesophagus
18	chr4:120143800-120167000	Weak transcription	Fetal Intestine Large	intestine
19	chr4:120146000-120178600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:120146400-120158800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:120148200-120213600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:120151800-120158000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:120152200-120159000	Weak transcription	Gastric	stomach
24	chr4:120152200-120167200	Weak transcription	Pancreas	Pancrea
25	chr4:120153600-120158800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:120153800-120160600	Weak transcription	HSMM	muscle
27	chr4:120154800-120158400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr4:120154800-120161800	Weak transcription	A549	lung
29	chr4:120155000-120166200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:120155200-120157600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:120155200-120161000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:120155200-120163400	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:120155200-120167000	Weak transcription	NH-A	brain
34	chr4:120155400-120157600	Weak transcription	HMEC	breast
35	chr4:120155400-120157800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:120155400-120158400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr4:120155400-120159000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr4:120155400-120159000	Weak transcription	Stomach Mucosa	stomach
39	chr4:120155400-120159000	Weak transcription	K562	blood
40	chr4:120155400-120159400	Strong transcription	Left Ventricle	heart
41	chr4:120155400-120160600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:120155400-120160600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:120155400-120165200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:120155400-120165800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:120155400-120166400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:120155400-120167200	Weak transcription	Aorta	Aorta
47	chr4:120155400-120167200	Weak transcription	Fetal Thymus	thymus
48	chr4:120155400-120167400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:120155400-120169800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr4:120155400-120169800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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