Variant report

Variant	rs11100761
Chromosome Location	chr4:143742567-143742568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143741827..143744468-chr4:143744792..143746567,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11939835	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13112916	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13122287	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13145724	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1441411	0.81[ASN][1000 genomes]
rs1441417	0.86[ASN][1000 genomes]
rs1441418	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444950	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1992652	0.84[ASN][1000 genomes]
rs2218240	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416530	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4575951	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690728	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690730	0.86[ASN][1000 genomes]
rs60263370	0.84[ASN][1000 genomes]
rs6537127	0.93[ASN][1000 genomes]
rs6537130	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6811022	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813785	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6831204	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839158	0.81[ASN][1000 genomes]
rs6846609	0.80[ASN][1000 genomes]
rs72615963	0.82[ASN][1000 genomes]
rs72728700	0.84[ASN][1000 genomes]
rs72730409	0.82[ASN][1000 genomes]
rs73850583	0.82[ASN][1000 genomes]
rs7660533	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668263	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7670139	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685997	0.84[ASN][1000 genomes]
rs9994364	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143732000-143744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:143732600-143745000	Weak transcription	Left Ventricle	heart
3	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
4	chr4:143739600-143743000	Weak transcription	Aorta	Aorta
5	chr4:143740200-143743000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:143740600-143745200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:143740800-143745400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:143741200-143746600	Weak transcription	Fetal Heart	heart
10	chr4:143741200-143751800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:143741400-143743200	Weak transcription	Small Intestine	intestine
12	chr4:143742000-143742800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:143742000-143743200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:143742200-143743200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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