Variant report

Variant	rs11100779
Chromosome Location	chr4:144104764-144104765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr4:144104684-144106232	K562	blood:	n/a	n/a
2	POLR2A	chr4:144104748-144107186	GM12878	blood:	n/a	n/a
3	EP300	chr4:144104710-144105023	K562	blood:	n/a	n/a
4	POLR2A	chr4:144104273-144108366	IMR90	lung:	n/a	n/a
5	POLR2A	chr4:144104751-144106347	K562	blood:	n/a	n/a
6	MXI1	chr4:144104531-144108320	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr4:144104705-144104929	SH-SY5Y	brain:	n/a	chr4:144104879-144104890
8	POLR2A	chr4:144104647-144107301	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:144092272..144094254-chr4:144104070..144105753,2	K562	blood:
2	chr4:143764792..143768376-chr4:144104488..144107848,3	MCF-7	breast:
3	chr4:144104098..144105841-chr4:144264877..144267593,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INPP4B-2	chr4:144104326-144105956	NONHSAT098550

No data

Variant related genes	Relation type
USP38	TF binding region
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs10000911	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10001113	0.87[ASN][1000 genomes]
rs10002867	0.87[ASN][1000 genomes]
rs10002888	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10004364	0.83[ASN][1000 genomes]
rs10004598	0.84[ASN][1000 genomes]
rs10009906	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10010367	0.87[ASN][1000 genomes]
rs10011709	0.89[ASN][1000 genomes]
rs10012434	0.89[ASN][1000 genomes]
rs10012713	0.82[CEU][hapmap]
rs10015190	0.89[ASN][1000 genomes]
rs10015751	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10019249	0.89[ASN][1000 genomes]
rs10026015	0.87[ASN][1000 genomes]
rs10028434	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10029373	0.87[ASN][1000 genomes]
rs10031363	0.84[ASN][1000 genomes]
rs10033104	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10034769	0.84[ASN][1000 genomes]
rs10155434	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1039762	0.87[ASN][1000 genomes]
rs1039763	0.87[ASN][1000 genomes]
rs10434185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519678	0.85[ASN][1000 genomes]
rs10857405	0.84[ASN][1000 genomes]
rs11100770	0.84[ASN][1000 genomes]
rs11100771	0.84[ASN][1000 genomes]
rs11100772	0.81[ASN][1000 genomes]
rs11100778	0.88[ASN][1000 genomes]
rs11100780	0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs11100781	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11100782	0.85[ASN][1000 genomes]
rs11100783	0.87[ASN][1000 genomes]
rs11724872	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11725565	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11727441	0.87[ASN][1000 genomes]
rs11728962	0.86[ASN][1000 genomes]
rs11732484	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11737209	0.87[ASN][1000 genomes]
rs11933603	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11940580	0.87[ASN][1000 genomes]
rs11947142	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12499485	0.85[ASN][1000 genomes]
rs12501994	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12505142	0.85[ASN][1000 genomes]
rs12506120	0.80[ASN][1000 genomes]
rs12640698	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12649219	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13102238	0.83[ASN][1000 genomes]
rs13106497	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs13113047	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13114280	0.85[ASN][1000 genomes]
rs13116414	0.85[ASN][1000 genomes]
rs13116507	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13118943	0.90[ASN][1000 genomes]
rs13119330	0.85[ASN][1000 genomes]
rs13128884	0.87[ASN][1000 genomes]
rs13137565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13138084	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13139457	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs13140643	0.84[ASN][1000 genomes]
rs13151561	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440410	0.85[ASN][1000 genomes]
rs1440411	0.87[ASN][1000 genomes]
rs1440412	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1440414	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440416	0.87[ASN][1000 genomes]
rs1440418	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440419	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1470130	0.86[ASN][1000 genomes]
rs1605581	0.87[ASN][1000 genomes]
rs2010767	0.85[ASN][1000 genomes]
rs2119269	0.85[ASN][1000 genomes]
rs2165301	0.85[ASN][1000 genomes]
rs2165302	0.87[ASN][1000 genomes]
rs2323076	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2323077	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28470858	0.85[ASN][1000 genomes]
rs28592151	0.89[ASN][1000 genomes]
rs28649839	0.87[ASN][1000 genomes]
rs300894	0.82[CEU][hapmap]
rs300921	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300924	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300925	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300927	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs300929	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs300934	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300938	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300939	0.87[ASN][1000 genomes]
rs300940	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300941	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300943	0.82[CEU][hapmap]
rs300951	0.86[CEU][hapmap];0.88[CHB][hapmap]
rs34168479	0.87[ASN][1000 genomes]
rs34342939	0.85[ASN][1000 genomes]
rs34664017	0.89[ASN][1000 genomes]
rs3910622	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131029	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4132266	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4234886	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4234887	0.85[ASN][1000 genomes]
rs4285045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4290853	0.85[ASN][1000 genomes]
rs4318600	0.84[ASN][1000 genomes]
rs4323054	0.84[ASN][1000 genomes]
rs4323055	0.84[ASN][1000 genomes]
rs4333135	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4336176	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4407450	0.85[ASN][1000 genomes]
rs4413361	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4502634	0.84[ASN][1000 genomes]
rs4511955	0.87[ASN][1000 genomes]
rs4513514	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4561881	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4566607	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4574353	0.85[ASN][1000 genomes]
rs4579067	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4582112	0.87[ASN][1000 genomes]
rs4626148	0.84[ASN][1000 genomes]
rs4637346	0.87[ASN][1000 genomes]
rs4690715	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4690771	0.84[ASN][1000 genomes]
rs4690774	0.81[ASN][1000 genomes]
rs4690775	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4690777	0.85[ASN][1000 genomes]
rs4690778	0.82[ASN][1000 genomes]
rs4690779	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4690780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690781	0.85[ASN][1000 genomes]
rs4690783	0.82[ASN][1000 genomes]
rs534750	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57168887	0.85[ASN][1000 genomes]
rs587254	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs632359	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6537150	0.84[ASN][1000 genomes]
rs6537151	0.84[ASN][1000 genomes]
rs6812522	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6816223	0.81[ASN][1000 genomes]
rs6818149	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6820340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6820538	0.87[ASN][1000 genomes]
rs6822299	0.85[ASN][1000 genomes]
rs6826771	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6827229	0.87[ASN][1000 genomes]
rs6828369	0.85[ASN][1000 genomes]
rs6829621	0.84[ASN][1000 genomes]
rs6832943	0.85[ASN][1000 genomes]
rs6833582	0.85[ASN][1000 genomes]
rs6837133	0.80[ASN][1000 genomes]
rs6839312	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6845478	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6845907	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6848475	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6854861	0.84[ASN][1000 genomes]
rs6856785	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72719159	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719160	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719163	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719173	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719179	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72719180	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7435424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7436840	0.90[ASN][1000 genomes]
rs763918	0.85[ASN][1000 genomes]
rs7656276	0.89[ASN][1000 genomes]
rs7670439	0.89[ASN][1000 genomes]
rs7673827	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7675127	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7680365	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685075	0.84[ASN][1000 genomes]
rs7685461	0.84[ASN][1000 genomes]
rs7687417	0.89[ASN][1000 genomes]
rs7692813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7693583	0.84[ASN][1000 genomes]
rs7693817	0.84[ASN][1000 genomes]
rs9308169	0.85[ASN][1000 genomes]
rs9631769	0.84[ASN][1000 genomes]
rs9685571	0.84[ASN][1000 genomes]
rs9790396	0.84[ASN][1000 genomes]
rs9790822	0.84[ASN][1000 genomes]
rs985619	0.85[ASN][1000 genomes]
rs9992676	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9996072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9998017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
3	chr4:144098400-144104800	Weak transcription	HSMMtube	muscle
4	chr4:144099200-144105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:144099200-144105400	Weak transcription	Left Ventricle	heart
6	chr4:144099200-144105400	Weak transcription	Small Intestine	intestine
7	chr4:144099800-144104800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:144100200-144105000	Weak transcription	Stomach Mucosa	stomach
9	chr4:144100200-144105000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:144100600-144104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:144100600-144104800	Weak transcription	Fetal Lung	lung
12	chr4:144100600-144105000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:144100600-144105200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:144102400-144104800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr4:144103000-144105000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:144103200-144104800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:144103200-144104800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr4:144103400-144104800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:144103400-144105000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr4:144103600-144104800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:144103600-144104800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:144103600-144105000	Enhancers	Primary hematopoietic stem cells	blood
23	chr4:144103600-144105000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr4:144103600-144105000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:144103600-144105000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr4:144103600-144105200	Enhancers	NH-A	brain
27	chr4:144103800-144104800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:144103800-144104800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:144103800-144104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:144103800-144104800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:144103800-144104800	Enhancers	Fetal Kidney	kidney
32	chr4:144103800-144105000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr4:144103800-144105000	Enhancers	Osteobl	bone
34	chr4:144104000-144104800	Enhancers	Primary B cells from cord blood	blood
35	chr4:144104000-144104800	Enhancers	Fetal Intestine Small	intestine
36	chr4:144104000-144104800	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr4:144104000-144104800	Enhancers	NHDF-Ad	bronchial
38	chr4:144104000-144105000	Enhancers	Colon Smooth Muscle	Colon
39	chr4:144104400-144104800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr4:144104400-144105000	Enhancers	Brain Hippocampus Middle	brain
41	chr4:144104400-144105200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:144104400-144109800	Active TSS	K562	blood
43	chr4:144104600-144104800	Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr4:144104600-144104800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr4:144104600-144104800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:144104600-144104800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:144104600-144104800	Enhancers	Brain Angular Gyrus	brain
48	chr4:144104600-144104800	Enhancers	Brain Anterior Caudate	brain
49	chr4:144104600-144104800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr4:144104600-144104800	Enhancers	Fetal Brain Female	brain

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