Variant report

Variant	rs11100780
Chromosome Location	chr4:144104906-144104907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr4:144104684-144106232	K562	blood:	n/a	n/a
2	POLR2A	chr4:144104748-144107186	GM12878	blood:	n/a	n/a
3	CEBPB	chr4:144104842-144105351	K562	blood:	n/a	chr4:144105183-144105194 chr4:144105182-144105195
4	POLR2A	chr4:144104897-144107185	MCF10A-Er-Src	breast:	n/a	n/a
5	EP300	chr4:144104710-144105023	K562	blood:	n/a	n/a
6	POLR2A	chr4:144104273-144108366	IMR90	lung:	n/a	n/a
7	STAT3	chr4:144104831-144106192	MCF10A-Er-Src	breast:	n/a	chr4:144105334-144105341
8	POLR2A	chr4:144104751-144106347	K562	blood:	n/a	n/a
9	POLR2A	chr4:144104864-144107625	GM12891	blood:	n/a	n/a
10	MXI1	chr4:144104531-144108320	SK-N-SH	brain:	n/a	n/a
11	GATA3	chr4:144104705-144104929	SH-SY5Y	brain:	n/a	chr4:144104879-144104890
12	POLR2A	chr4:144104647-144107301	GM12878	blood:	n/a	n/a
13	EP300	chr4:144104787-144104906	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:144104893-144104943	BE2_C	brain:	n/a
2	chr4:144104893-144104943	AG04449	skin:	fetal
3	chr4:144104893-144104943	GM19239	blood:	n/a
4	chr4:144104893-144104943	SK-N-SH_RA	brain:	n/a
5	chr4:144104893-144104943	NHBE	bronchial:	n/a
6	chr4:144104893-144104943	PFSK-1	brain:	n/a
7	chr4:144104893-144104943	PrEC	prostate:	n/a
8	chr4:144104893-144104943	ECC-1	luminal epithelium:	n/a
9	chr4:144104893-144104943	AG10803	skin:	n/a
10	chr4:144104893-144104943	SK-N-MC	brain:	n/a
11	chr4:144104893-144104943	RPTEC	kidney:	n/a
12	chr4:144104893-144104943	AG09309	skin:	n/a
13	chr4:144104893-144104943	GM06990	blood:	n/a
14	chr4:144104893-144104943	K562	blood:	n/a
15	chr4:144104893-144104943	HAEpiC	amniotic membrane:	n/a
16	chr4:144104893-144104943	HEK293	kidney:	embryo
17	chr4:144104893-144104943	Hela-S3	cervix:	n/a
18	chr4:144104893-144104943	ProgFib	skin:	n/a
19	chr4:144104893-144104943	GM12892	blood:	n/a
20	chr4:144104893-144104943	ovcar-3	ovarian:	n/a
21	chr4:144104893-144104943	HRCEpiC	kidney:	n/a
22	chr4:144104893-144104943	MCF10A-Er-Src	breast:	n/a
23	chr4:144104893-144104943	HCF	heart:	n/a
24	chr4:144104893-144104943	GM12878	blood:	n/a
25	chr4:144104893-144104943	U87	brain:	n/a
26	chr4:144104893-144104943	HNPCEpiC	eye:	n/a
27	chr4:144104893-144104943	MCF-7	breast:	n/a
28	chr4:144104893-144104943	HRPEpiC	eye:	n/a
29	chr4:144104893-144104943	HPAEpiC	pulmonary alveolar:	n/a
30	chr4:144104893-144104943	HEEpiC	esophagus:	n/a
31	chr4:144104893-144104943	AoSMC	blood vessel:	n/a
32	chr4:144104893-144104943	CMK	blood:	n/a
33	chr4:144104893-144104943	BJ	skin:	n/a
34	chr4:144104893-144104943	A549	lung:	n/a
35	chr4:144104893-144104943	GM12891	blood:	n/a
36	chr4:144104893-144104943	HCPEpiC	choroid plexus:	n/a
37	chr4:144104893-144104943	H1-hESC	embryonic stem cell:	embryo
38	chr4:144104893-144104943	HRE	kidney:	n/a
39	chr4:144104893-144104943	SK-N-SH	brain:	n/a
40	chr4:144104893-144104943	AG04450	lung:	fetal
41	chr4:144104893-144104943	LNCaP	prostate:	n/a
42	chr4:144104893-144104943	SAEC	small airway:	n/a
43	chr4:144104893-144104943	HMEC	breast:	n/a
44	chr4:144104893-144104943	HUVEC	blood vessel:	n/a
45	chr4:144104893-144104943	IMR90	lung:	fetal
46	chr4:144104893-144104943	NH-A	brain:	n/a
47	chr4:144104893-144104943	NT2-D1	testis:	n/a
48	chr4:144104893-144104943	HIPEpiC	eye:	n/a
49	chr4:144104893-144104943	NB4	blood:	n/a
50	chr4:144104893-144104943	AG09319	gingival:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:144104818..144107585-chr4:144256509..144260468,4	MCF-7	breast:
2	chr4:144092272..144094254-chr4:144104070..144105753,2	K562	blood:
3	chr4:144104831..144107773-chr4:144434197..144436489,3	K562	blood:
4	chr4:143764792..143768376-chr4:144104488..144107848,3	MCF-7	breast:
5	chr4:144104098..144105841-chr4:144264877..144267593,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INPP4B-2	chr4:144104326-144105956	NONHSAT098550

No data

Variant related genes	Relation type
USP38	TF binding region
USP38	CpG island
ENSG00000109452	Chromatin interaction
ENSG00000245112	Chromatin interaction
ENSG00000153147	Chromatin interaction
ENSG00000178972	Chromatin interaction
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 188 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10000911	0.94[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.90[ASN][1000 genomes]
rs10001113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10002867	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10002888	0.90[ASN][1000 genomes]
rs10004364	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10004598	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10009906	0.90[ASN][1000 genomes]
rs10010367	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10011709	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012434	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015190	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015751	0.90[ASN][1000 genomes]
rs10019249	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026015	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10028434	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10029373	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10031363	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10033104	0.90[ASN][1000 genomes]
rs10034769	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10155434	1.00[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs1039762	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039763	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10434185	0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs10519678	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857405	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100770	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100771	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100772	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11100778	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100779	0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs11100781	0.90[ASN][1000 genomes]
rs11100782	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100783	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11724872	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11725565	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11727441	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11728962	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11732484	0.90[ASN][1000 genomes]
rs11737209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11933603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11940580	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11943957	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11947142	0.89[ASN][1000 genomes]
rs12499485	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12501994	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505142	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506120	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12640698	0.93[ASN][1000 genomes]
rs12647238	0.81[ASN][1000 genomes]
rs12649219	0.90[ASN][1000 genomes]
rs13102238	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13106497	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13113047	0.90[ASN][1000 genomes]
rs13114280	0.83[ASN][1000 genomes]
rs13116414	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13116507	0.82[ASN][1000 genomes]
rs13118943	0.88[ASN][1000 genomes]
rs13119330	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13128884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13137565	1.00[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs13138084	0.90[ASN][1000 genomes]
rs13139457	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13140643	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13151561	0.90[ASN][1000 genomes]
rs1440410	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1440411	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440412	0.89[ASN][1000 genomes]
rs1440414	0.90[ASN][1000 genomes]
rs1440416	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440418	0.90[ASN][1000 genomes]
rs1440419	0.90[ASN][1000 genomes]
rs1470130	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1605581	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2010767	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2119269	0.83[ASN][1000 genomes]
rs2165301	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2165302	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2323076	0.90[ASN][1000 genomes]
rs2323077	0.90[ASN][1000 genomes]
rs28470858	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28592151	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28649839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300921	0.89[ASN][1000 genomes]
rs300924	0.89[ASN][1000 genomes]
rs300925	0.89[ASN][1000 genomes]
rs300927	0.84[ASN][1000 genomes]
rs300929	0.84[ASN][1000 genomes]
rs300934	0.90[ASN][1000 genomes]
rs300938	0.90[ASN][1000 genomes]
rs300939	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300940	0.90[ASN][1000 genomes]
rs300941	0.90[ASN][1000 genomes]
rs34168479	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34342939	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34664017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910622	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4131029	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4132266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234886	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4234887	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4285045	1.00[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs4290853	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4312712	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4318600	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323054	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323055	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4333135	0.82[ASN][1000 genomes]
rs4336176	0.88[ASN][1000 genomes]
rs4407450	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4413361	0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs4502634	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4511955	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4513514	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4561881	0.82[ASN][1000 genomes]
rs4563450	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4566607	0.88[ASN][1000 genomes]
rs4574353	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4579067	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4582112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4626148	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4637346	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690715	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690771	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690773	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4690774	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4690775	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690777	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690778	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4690779	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690780	0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs4690781	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690783	0.80[ASN][1000 genomes]
rs534750	0.90[ASN][1000 genomes]
rs57168887	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587254	0.90[ASN][1000 genomes]
rs62330278	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62330280	0.83[ASN][1000 genomes]
rs632359	0.90[ASN][1000 genomes]
rs6537150	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537151	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6812522	0.93[ASN][1000 genomes]
rs6816223	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818149	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6820340	0.86[JPT][hapmap]
rs6820538	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822299	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6826771	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6827229	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828369	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6829621	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6832943	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833582	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837133	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6839312	0.90[ASN][1000 genomes]
rs6845478	0.90[ASN][1000 genomes]
rs6845907	0.90[ASN][1000 genomes]
rs6848475	0.90[ASN][1000 genomes]
rs6854861	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856785	0.90[ASN][1000 genomes]
rs72719159	0.88[ASN][1000 genomes]
rs72719160	0.88[ASN][1000 genomes]
rs72719163	0.88[ASN][1000 genomes]
rs72719173	0.86[ASN][1000 genomes]
rs72719179	0.88[ASN][1000 genomes]
rs72719180	0.88[ASN][1000 genomes]
rs7435424	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7436840	0.88[ASN][1000 genomes]
rs763918	0.83[ASN][1000 genomes]
rs7656276	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670439	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673827	0.90[ASN][1000 genomes]
rs7675127	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7680365	0.93[ASN][1000 genomes]
rs7685075	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685461	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7687417	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692813	0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs7693583	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7693817	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9308169	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9631769	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685571	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9790396	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9790822	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs985619	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9992676	0.90[ASN][1000 genomes]
rs9996072	0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs9998017	1.00[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11100780	SETD7	cis	parietal	SCAN

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144099200-144105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:144099200-144105400	Weak transcription	Left Ventricle	heart
3	chr4:144099200-144105400	Weak transcription	Small Intestine	intestine
4	chr4:144100200-144105000	Weak transcription	Stomach Mucosa	stomach
5	chr4:144100200-144105000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:144100600-144105000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:144100600-144105200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:144103000-144105000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:144103400-144105000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr4:144103600-144105000	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:144103600-144105000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:144103600-144105000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:144103600-144105000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr4:144103600-144105200	Enhancers	NH-A	brain
15	chr4:144103800-144105000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:144103800-144105000	Enhancers	Osteobl	bone
17	chr4:144104000-144105000	Enhancers	Colon Smooth Muscle	Colon
18	chr4:144104400-144105000	Enhancers	Brain Hippocampus Middle	brain
19	chr4:144104400-144105200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:144104400-144109800	Active TSS	K562	blood
21	chr4:144104600-144105000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:144104600-144105000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:144104600-144105000	Flanking Active TSS	HMEC	breast
24	chr4:144104600-144105000	Enhancers	NHEK	skin
25	chr4:144104600-144105200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:144104600-144105200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:144104600-144105200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr4:144104600-144105200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr4:144104600-144105200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:144104600-144105200	Enhancers	Liver	Liver
31	chr4:144104600-144105200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr4:144104600-144105200	Weak transcription	HSMM	muscle
33	chr4:144104600-144105400	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr4:144104600-144105400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:144104600-144105400	Flanking Active TSS	Dnd41	blood
36	chr4:144104600-144105600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:144104600-144106600	Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr4:144104600-144108600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr4:144104600-144109000	Active TSS	Duodenum Mucosa	Duodenum
40	chr4:144104600-144109600	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr4:144104800-144105000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr4:144104800-144105000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:144104800-144105000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr4:144104800-144105000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:144104800-144105000	Active TSS	Adipose Nuclei	Adipose
46	chr4:144104800-144105000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr4:144104800-144105000	Enhancers	Brain Substantia Nigra	brain
48	chr4:144104800-144105000	Enhancers	Fetal Heart	heart
49	chr4:144104800-144105000	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr4:144104800-144105000	Enhancers	Fetal Thymus	thymus

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