Variant report

Variant	rs11100786
Chromosome Location	chr4:144301054-144301055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144254627..144258395-chr4:144297952..144301828,4	K562	blood:
2	chr4:144292852..144297100-chr4:144298409..144302941,5	K562	blood:
3	chr4:144299400..144301389-chr4:144302183..144304339,2	K562	blood:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10013047	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1027851	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027852	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100788	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100789	0.83[ASN][1000 genomes]
rs11730569	0.97[ASN][1000 genomes]
rs11945731	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12647531	0.97[ASN][1000 genomes]
rs12649592	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13101346	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13123498	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1397526	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1397527	0.83[AMR][1000 genomes]
rs1397528	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1472873	0.97[ASN][1000 genomes]
rs1510879	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1510880	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1866756	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2048408	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2055730	0.97[ASN][1000 genomes]
rs2119270	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196908	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2196909	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300910	0.87[ASN][1000 genomes]
rs300911	0.85[ASN][1000 genomes]
rs300912	0.85[ASN][1000 genomes]
rs300913	0.85[ASN][1000 genomes]
rs300914	0.85[ASN][1000 genomes]
rs300915	0.85[ASN][1000 genomes]
rs300916	0.82[ASN][1000 genomes]
rs300917	0.81[ASN][1000 genomes]
rs300918	0.81[ASN][1000 genomes]
rs34095331	0.87[ASN][1000 genomes]
rs34439737	0.90[ASN][1000 genomes]
rs3792652	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792653	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792655	0.97[ASN][1000 genomes]
rs3805238	0.86[ASN][1000 genomes]
rs3805245	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805246	0.97[ASN][1000 genomes]
rs3805247	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805249	0.97[ASN][1000 genomes]
rs3805251	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805252	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805253	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805254	0.97[ASN][1000 genomes]
rs3805256	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805257	0.95[ASN][1000 genomes]
rs3828512	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828513	0.97[ASN][1000 genomes]
rs3828514	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55758499	0.97[ASN][1000 genomes]
rs55894236	0.97[ASN][1000 genomes]
rs6537154	0.97[ASN][1000 genomes]
rs6537155	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs713140	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs719392	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7680959	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs906571	0.97[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144283000-144302200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:144291800-144302200	Weak transcription	Esophagus	oesophagus
3	chr4:144293200-144302400	Enhancers	Brain Substantia Nigra	brain
4	chr4:144293600-144302000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:144294000-144302200	Weak transcription	Spleen	Spleen
6	chr4:144294000-144302400	Weak transcription	Gastric	stomach
7	chr4:144295000-144302800	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:144295200-144302400	Enhancers	Brain Anterior Caudate	brain
9	chr4:144295400-144302000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:144295600-144302400	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:144295600-144303000	Enhancers	Brain Angular Gyrus	brain
12	chr4:144296000-144302200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:144296200-144302400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:144296600-144301200	Enhancers	Primary B cells from peripheral blood	blood
15	chr4:144296800-144304600	Enhancers	Liver	Liver
16	chr4:144297000-144301600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:144297000-144302200	Weak transcription	Stomach Mucosa	stomach
18	chr4:144297000-144302600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:144297200-144302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:144297200-144302200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:144297200-144302200	Weak transcription	HMEC	breast
22	chr4:144297200-144302400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:144297200-144302400	Enhancers	Brain Hippocampus Middle	brain
24	chr4:144297200-144302400	Weak transcription	Fetal Thymus	thymus
25	chr4:144297200-144305600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:144297400-144301800	Weak transcription	Aorta	Aorta
27	chr4:144297400-144301800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:144297400-144302200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:144297400-144302400	Weak transcription	Brain Germinal Matrix	brain
30	chr4:144298000-144303600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr4:144298000-144305800	Enhancers	Fetal Stomach	stomach
32	chr4:144298200-144302000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr4:144298600-144303200	Enhancers	Fetal Muscle Leg	muscle
34	chr4:144298800-144301400	Enhancers	Ovary	ovary
35	chr4:144299000-144301400	Enhancers	Right Ventricle	heart
36	chr4:144299000-144303400	Enhancers	HepG2	liver
37	chr4:144299000-144304600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:144299400-144302200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:144299400-144303000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr4:144299400-144303400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr4:144299600-144301800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:144299600-144302000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:144299600-144303000	Enhancers	Primary B cells from cord blood	blood
44	chr4:144299600-144303800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:144299800-144301200	Enhancers	Left Ventricle	heart
46	chr4:144299800-144301200	Enhancers	Right Atrium	heart
47	chr4:144299800-144301200	Enhancers	Small Intestine	intestine
48	chr4:144299800-144302000	Weak transcription	NHLF	lung
49	chr4:144299800-144302600	Enhancers	Fetal Heart	heart
50	chr4:144300000-144302000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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