Variant report

Variant	rs11101159
Chromosome Location	chr10:50766484-50766485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50760936..50763303-chr10:50765007..50767673,2	K562	blood:
2	chr10:50765967..50768022-chr10:50768615..50770437,2	MCF-7	breast:
3	chr10:50760373..50763303-chr10:50765007..50769387,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10776582	0.99[ASN][1000 genomes]
rs10857499	0.83[EUR][1000 genomes]
rs10857507	0.90[ASN][1000 genomes]
rs10857508	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857509	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101164	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101165	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101166	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11101175	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11527800	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12220638	0.83[EUR][1000 genomes]
rs12221479	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242851	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12412526	0.86[EUR][1000 genomes]
rs12412748	0.83[EUR][1000 genomes]
rs12570332	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572848	0.83[EUR][1000 genomes]
rs1917801	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1917802	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1917817	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1949883	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1949884	0.90[ASN][1000 genomes]
rs2103202	0.90[ASN][1000 genomes]
rs2177820	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2377902	0.83[ASN][1000 genomes]
rs3750746	0.87[ASN][1000 genomes]
rs3750751	0.83[EUR][1000 genomes]
rs4240510	0.86[EUR][1000 genomes]
rs4253023	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4253079	0.86[EUR][1000 genomes]
rs4253231	0.83[EUR][1000 genomes]
rs4453140	0.92[ASN][1000 genomes]
rs4838522	0.86[EUR][1000 genomes]
rs4838527	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4838529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537539	0.92[ASN][1000 genomes]
rs7078115	0.99[ASN][1000 genomes]
rs7080837	0.99[ASN][1000 genomes]
rs7081904	0.99[ASN][1000 genomes]
rs7095259	0.99[ASN][1000 genomes]
rs7098129	0.89[ASN][1000 genomes]
rs72795703	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50760600-50767400	Weak transcription	HSMMtube	muscle
2	chr10:50761600-50770400	Weak transcription	HSMM	muscle
3	chr10:50763400-50768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:50763400-50771000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:50764400-50766800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:50764400-50768200	Enhancers	Osteobl	bone
7	chr10:50764400-50769200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:50764600-50766600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:50764600-50767600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:50765200-50766600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:50765600-50766800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:50766200-50767200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:50766400-50767400	Weak transcription	NHDF-Ad	bronchial
14	chr10:50766400-50767600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:50766400-50768200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links