Variant report

Variant	rs11101160
Chromosome Location	chr10:50771611-50771612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11101181	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12256799	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12261316	1.00[AMR][1000 genomes]
rs12262084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267850	1.00[AMR][1000 genomes]
rs12268018	1.00[AMR][1000 genomes]
rs4253054	1.00[AMR][1000 genomes]
rs4253093	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4253122	1.00[AMR][1000 genomes]
rs4253207	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4253208	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4253220	1.00[AMR][1000 genomes]
rs55719105	1.00[AMR][1000 genomes]
rs9971046	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50768600-50773200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:50770000-50773000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:50770000-50773400	Enhancers	Osteobl	bone
4	chr10:50770200-50773400	Enhancers	Hela-S3	cervix
5	chr10:50770200-50773800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:50770400-50772000	Enhancers	HSMM	muscle
7	chr10:50770400-50773200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:50770600-50772600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:50770800-50773200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:50771000-50771800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:50771000-50771800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:50771000-50772800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:50771000-50773400	Enhancers	HMEC	breast
14	chr10:50771200-50772000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:50771200-50772800	Enhancers	NHDF-Ad	bronchial
16	chr10:50771200-50773000	Enhancers	HSMMtube	muscle
17	chr10:50771200-50773400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr10:50771600-50772800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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