Variant report

Variant	rs11101409
Chromosome Location	chr10:49837779-49837780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12775289	1.00[CHB][hapmap]
rs3851548	1.00[CHB][hapmap]
rs4593967	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49828800-49841400	Weak transcription	Aorta	Aorta
3	chr10:49831600-49843400	Weak transcription	Right Atrium	heart
4	chr10:49832400-49842000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:49833600-49839800	Weak transcription	Osteobl	bone
6	chr10:49834200-49842000	Weak transcription	NHLF	lung
7	chr10:49835000-49840000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:49836600-49840800	Weak transcription	NHDF-Ad	bronchial
9	chr10:49836800-49840000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:49837400-49840400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:49837400-49841600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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