Variant report

Variant	rs11103880
Chromosome Location	chr12:86573493-86573494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10745407	0.87[YRI][hapmap]
rs10776953	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10776954	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10776955	0.86[YRI][hapmap]
rs10858408	0.87[YRI][hapmap]
rs11103877	1.00[CEU][hapmap]
rs11835108	1.00[CEU][hapmap]
rs12309228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12311272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12311407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12311449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13378062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1389294	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1389295	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1463749	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1493408	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1493413	0.88[ASN][1000 genomes]
rs1493416	0.88[ASN][1000 genomes]
rs1493417	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1493418	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1493419	1.00[JPT][hapmap]
rs1493420	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1493421	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1532262	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1542780	1.00[JPT][hapmap]
rs1552839	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1602850	0.88[ASN][1000 genomes]
rs17013976	1.00[CEU][hapmap]
rs2131565	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2201281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2220782	1.00[CEU][hapmap]
rs2250915	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2405934	1.00[JPT][hapmap]
rs2406122	0.86[YRI][hapmap]
rs2452803	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2452805	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2452806	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2452811	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2452815	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2465142	0.88[ASN][1000 genomes]
rs2465143	0.82[YRI][hapmap]
rs2465144	0.86[YRI][hapmap]
rs2465145	0.88[ASN][1000 genomes]
rs2465146	0.88[ASN][1000 genomes]
rs2465149	1.00[JPT][hapmap]
rs2471561	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2471562	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2471563	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2471564	1.00[JPT][hapmap]
rs2471567	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2471569	0.81[YRI][hapmap]
rs6538029	0.87[YRI][hapmap]
rs7134045	1.00[JPT][hapmap]
rs7137308	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7953494	0.88[ASN][1000 genomes]
rs7964553	0.87[YRI][hapmap]
rs7973773	0.87[YRI][hapmap]
rs839150	0.85[YRI][hapmap]
rs839166	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv800	chr12:86572379-86617887	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links