Variant report

Variant	rs11103946
Chromosome Location	chr12:86785365-86785366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86783284..86785651-chr14:104583194..104586028,2	MCF-7	breast:
2	chr12:86723150..86725256-chr12:86785265..86787177,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207568	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10745415	0.84[EUR][1000 genomes]
rs10776954	0.93[EUR][1000 genomes]
rs10776958	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10776960	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10776967	0.98[EUR][1000 genomes]
rs10858409	0.84[EUR][1000 genomes]
rs10858411	0.96[EUR][1000 genomes]
rs10858417	0.97[EUR][1000 genomes]
rs10858420	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10858429	0.84[EUR][1000 genomes]
rs1389292	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1389294	0.91[EUR][1000 genomes]
rs1389295	0.87[EUR][1000 genomes]
rs1493413	0.91[EUR][1000 genomes]
rs1493414	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1493417	0.89[EUR][1000 genomes]
rs1493418	0.90[EUR][1000 genomes]
rs1532263	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1922745	0.84[EUR][1000 genomes]
rs1994863	0.85[EUR][1000 genomes]
rs2406120	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2406121	0.90[EUR][1000 genomes]
rs2406142	0.84[EUR][1000 genomes]
rs2406156	0.82[EUR][1000 genomes]
rs2452803	0.93[EUR][1000 genomes]
rs2452805	0.91[EUR][1000 genomes]
rs2452808	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2465142	0.87[EUR][1000 genomes]
rs2465145	0.93[EUR][1000 genomes]
rs2465148	0.93[EUR][1000 genomes]
rs2471567	0.87[EUR][1000 genomes]
rs4300451	0.84[EUR][1000 genomes]
rs4329741	0.93[EUR][1000 genomes]
rs4842512	0.81[EUR][1000 genomes]
rs6538043	0.83[EUR][1000 genomes]
rs6538044	0.84[EUR][1000 genomes]
rs7303642	0.90[EUR][1000 genomes]
rs7316265	0.82[EUR][1000 genomes]
rs7953494	0.93[EUR][1000 genomes]
rs7954833	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7954883	0.84[EUR][1000 genomes]
rs7963957	0.84[EUR][1000 genomes]
rs7966656	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs839107	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11103946	MGAT4C	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86785200-86789400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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