Variant report

Variant	rs11103956
Chromosome Location	chr12:86829933-86829934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10160933	1.00[YRI][hapmap]
rs11103901	1.00[YRI][hapmap]
rs11103902	1.00[YRI][hapmap]
rs11103910	1.00[YRI][hapmap]
rs11103922	0.85[YRI][hapmap]
rs11103937	1.00[YRI][hapmap]
rs11103959	0.85[YRI][hapmap]
rs11103986	0.85[YRI][hapmap]
rs12296316	0.85[YRI][hapmap]
rs12299950	1.00[YRI][hapmap]
rs12306070	1.00[YRI][hapmap]
rs12306726	1.00[YRI][hapmap]
rs12308711	1.00[YRI][hapmap]
rs12311647	1.00[YRI][hapmap]
rs12314245	0.83[AFR][1000 genomes]
rs12316205	0.85[YRI][hapmap]
rs12316403	0.83[AFR][1000 genomes]
rs12316480	1.00[YRI][hapmap]
rs12317029	0.85[AFR][1000 genomes]
rs12318124	1.00[YRI][hapmap]
rs12318366	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12318998	1.00[YRI][hapmap]
rs12319070	0.85[YRI][hapmap]
rs12321412	1.00[YRI][hapmap]
rs12321594	1.00[YRI][hapmap]
rs4842468	1.00[YRI][hapmap]
rs9971936	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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