Variant report

Variant	rs11117162
Chromosome Location	chr12:86425608-86425609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779227	0.88[LWK][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1097997	1.00[ASW][hapmap];0.84[CEU][hapmap];0.86[GIH][hapmap]
rs11513955	0.88[AFR][1000 genomes]
rs11611607	0.96[AFR][1000 genomes]
rs1374996	1.00[YRI][hapmap]
rs1502803	1.00[YRI][hapmap]
rs1847206	0.96[AFR][1000 genomes]
rs35629197	0.87[AFR][1000 genomes]
rs61929393	0.87[AFR][1000 genomes]
rs61929399	0.96[AFR][1000 genomes]
rs61929424	0.96[AFR][1000 genomes]
rs61931120	0.92[AFR][1000 genomes]
rs61931121	0.92[AFR][1000 genomes]
rs6538021	0.83[CEU][hapmap]
rs6539944	0.92[AFR][1000 genomes]
rs73177179	0.87[AFR][1000 genomes]
rs73187656	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187675	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7398950	0.94[GIH][hapmap];0.92[TSI][hapmap]
rs7961367	0.94[GIH][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.96[AFR][1000 genomes]
rs7965726	0.94[GIH][hapmap]
rs7967417	0.94[GIH][hapmap];0.92[TSI][hapmap]
rs7971447	0.96[AFR][1000 genomes]
rs839099	0.84[CEU][hapmap]
rs839109	0.84[CEU][hapmap]
rs839112	0.84[CEU][hapmap]
rs839114	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap]
rs839116	0.84[CEU][hapmap]
rs839117	0.84[CEU][hapmap]
rs839134	0.84[CEU][hapmap]
rs839138	0.84[CEU][hapmap]
rs839139	0.84[CEU][hapmap]
rs839147	0.83[CEU][hapmap]
rs839183	0.84[CEU][hapmap]
rs839189	1.00[ASW][hapmap]
rs844437	0.84[CEU][hapmap]
rs9668994	1.00[YRI][hapmap]
rs9669353	0.88[GIH][hapmap];0.88[LWK][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs9738989	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv559668	chr12:86416212-86432115	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv559669	chr12:86425608-86431985	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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