Variant report

Variant	rs11117717
Chromosome Location	chr1:217062140-217062141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17044247	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4846746	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217055600-217062200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:217058000-217062200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:217058200-217067600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:217058400-217065200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:217058400-217067800	Weak transcription	Small Intestine	intestine
6	chr1:217058600-217067800	Weak transcription	Fetal Kidney	kidney
7	chr1:217058800-217066000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:217060600-217062400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:217061200-217062600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:217061400-217062400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:217061400-217062600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:217061400-217062800	Enhancers	Fetal Intestine Small	intestine
13	chr1:217061400-217063000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:217061600-217063000	Enhancers	Fetal Heart	heart
15	chr1:217061600-217063000	Enhancers	Fetal Intestine Large	intestine
16	chr1:217061800-217062800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:217062000-217062400	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr1:217062000-217062400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:217062000-217062600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:217062000-217062800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:217062000-217062800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:217062000-217062800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr1:217062000-217062800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr1:217062000-217062800	Enhancers	Stomach Mucosa	stomach

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