Variant report

Variant	rs11118507
Chromosome Location	chr1:220407355-220407356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220401289..220404210-chr1:220406154..220407744,2	MCF-7	breast:
2	chr1:220405526..220409117-chr1:220409485..220413749,4	K562	blood:
3	chr1:220398979..220400909-chr1:220405433..220407745,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10863537	0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs10863538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026681	1.00[CEU][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs1397958	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1588578	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2221833	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2667967	0.91[EUR][1000 genomes]
rs2667968	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2667969	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2667970	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2808008	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2808009	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2808011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2808012	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2808013	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2808016	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2808018	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2808019	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2814492	0.95[ASN][1000 genomes]
rs2814494	0.82[ASN][1000 genomes]
rs2814495	0.94[ASN][1000 genomes]
rs4142940	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4511114	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6541127	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6696985	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7535619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4643	chr1:220397642-220442231	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220374600-220407600	Weak transcription	Fetal Brain Male	brain
2	chr1:220379000-220418200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:220379200-220409600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:220379200-220410800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:220379200-220422600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:220381200-220422000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:220384200-220408800	Weak transcription	A549	lung
8	chr1:220384200-220420600	Weak transcription	Fetal Kidney	kidney
9	chr1:220384200-220423000	Weak transcription	Esophagus	oesophagus
10	chr1:220384200-220425800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:220384400-220413400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:220384800-220408000	Weak transcription	Hela-S3	cervix
13	chr1:220384800-220417000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:220385400-220409000	Weak transcription	NH-A	brain
15	chr1:220385400-220419400	Weak transcription	HUVEC	blood vessel
16	chr1:220385600-220408000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:220393000-220441000	Weak transcription	NHDF-Ad	bronchial
18	chr1:220393200-220408800	Weak transcription	Brain Angular Gyrus	brain
19	chr1:220393200-220413400	Weak transcription	Fetal Heart	heart
20	chr1:220393400-220411400	Weak transcription	Fetal Brain Female	brain
21	chr1:220393800-220425800	Weak transcription	Gastric	stomach
22	chr1:220394000-220422600	Weak transcription	Thymus	Thymus
23	chr1:220394400-220407800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:220398400-220420400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:220399000-220407400	Weak transcription	Small Intestine	intestine
26	chr1:220399000-220418400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:220399200-220414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:220399400-220408200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:220399600-220414600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:220400400-220423000	Weak transcription	Pancreas	Pancrea
31	chr1:220400600-220407600	Weak transcription	Adipose Nuclei	Adipose
32	chr1:220400600-220409600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr1:220400600-220415600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr1:220400600-220422200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:220400800-220408200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr1:220400800-220422200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:220401000-220409000	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:220401000-220425200	Weak transcription	Right Ventricle	heart
39	chr1:220401200-220418200	Weak transcription	Spleen	Spleen
40	chr1:220401200-220422800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:220401400-220420600	Weak transcription	Fetal Intestine Small	intestine
42	chr1:220401400-220422600	Weak transcription	Fetal Stomach	stomach
43	chr1:220401400-220422600	Weak transcription	Left Ventricle	heart
44	chr1:220401600-220425800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr1:220402200-220412600	Weak transcription	Psoas Muscle	Psoas
46	chr1:220402200-220420800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:220402600-220414800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr1:220403600-220408600	Weak transcription	Brain Anterior Caudate	brain
49	chr1:220403800-220407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr1:220403800-220415400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links