Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220667943..220669799-chr1:220670395..220671948,2	MCF-7	breast:
2	chr1:220665810..220668955-chr1:220670938..220674066,3	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1073460	0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs10779408	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779409	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12048541	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12405059	0.86[JPT][hapmap]
rs12568419	0.87[JPT][hapmap]
rs12753927	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12758833	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17007855	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17007885	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933002	0.90[JPT][hapmap]
rs1933008	0.91[JPT][hapmap]
rs2253641	0.84[JPT][hapmap]
rs2589588	0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs2786601	0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs2786604	0.91[JPT][hapmap]
rs2786607	0.85[JPT][hapmap]
rs2786609	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2786613	0.91[JPT][hapmap]
rs2786619	0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs2889928	0.82[EUR][1000 genomes]
rs35327085	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35553664	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3737296	0.82[JPT][hapmap]
rs4011894	0.82[JPT][hapmap]
rs4846657	0.81[JPT][hapmap]
rs6699189	0.86[JPT][hapmap]
rs6699196	0.91[JPT][hapmap]
rs7514431	0.82[JPT][hapmap]
rs7532064	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220670400-220672200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:220670400-220672400	Enhancers	NHEK	skin
3	chr1:220670600-220671200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:220670600-220671200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:220670600-220671200	Enhancers	Esophagus	oesophagus
6	chr1:220670600-220671400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:220670600-220672200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:220670600-220672200	Enhancers	Adipose Nuclei	Adipose
9	chr1:220670600-220672400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:220670600-220672400	Enhancers	HMEC	breast
11	chr1:220670800-220672400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:220671000-220672400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: