Variant report

Variant	rs11118564
Chromosome Location	chr1:220675924-220675925
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10495149	0.80[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs10746403	0.87[CHB][hapmap];0.81[CHD][hapmap];0.88[TSI][hapmap]
rs10779412	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs10779414	0.83[CEU][hapmap];0.86[CHB][hapmap]
rs10863557	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118565	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118566	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118567	0.85[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118570	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118573	0.85[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11118576	0.85[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs11588721	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12046244	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12047297	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12408540	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12737023	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933001	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1933007	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2095669	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2152836	0.83[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs2244448	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2378400	0.80[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2589581	0.80[EUR][1000 genomes]
rs2589586	0.87[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs2589589	0.87[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786598	0.85[EUR][1000 genomes]
rs2786606	0.87[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap]
rs2786610	0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2786617	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs2889895	0.87[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs35287074	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3753873	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3753874	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3767319	0.83[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap]
rs3767320	0.84[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap]
rs3767321	0.83[CHB][hapmap]
rs3767323	0.80[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs3820347	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs3860322	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3899315	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4120669	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4846326	0.85[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846650	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846653	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846655	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6541154	0.84[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6675368	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6695583	0.83[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap]
rs7555225	0.94[ASW][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap]
rs7556280	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9430949	0.85[CEU][hapmap];0.95[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11118564	C1orf115	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220672400-220676200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:220675800-220676200	Enhancers	Fetal Intestine Small	intestine

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