Variant report

Variant	rs11118565
Chromosome Location	chr1:220690740-220690741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220671963..220674578-chr1:220689545..220691145,2	MCF-7	breast:
2	chr1:220684697..220687994-chr1:220690391..220694030,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10863557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118564	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118566	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118567	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11118570	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11118573	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11588721	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12047297	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12408540	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12737023	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1933001	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1933007	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2095669	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2244448	0.81[EUR][1000 genomes]
rs2589581	0.82[EUR][1000 genomes]
rs2589586	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2589589	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2786598	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2786610	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786617	0.82[EUR][1000 genomes]
rs35287074	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3753873	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3753874	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3860322	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4846326	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4846650	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4846653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4846655	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6541154	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6675368	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7556280	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9430949	0.81[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220687200-220691000	Enhancers	HMEC	breast
2	chr1:220687400-220691000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:220690200-220691600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:220690400-220690800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:220690400-220691000	Enhancers	NHEK	skin
6	chr1:220690400-220691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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