Variant report

Variant	rs11119483
Chromosome Location	chr1:210573393-210573394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210566055..210568677-chr1:210572512..210575312,3	MCF-7	breast:
3	chr1:210572425..210575594-chr1:210579116..210581300,3	K562	blood:
4	chr1:210573314..210577563-chr1:210578533..210582759,4	K562	blood:
5	chr1:210572567..210575023-chr1:211309974..211312335,2	MCF-7	breast:
6	chr1:210544801..210552702-chr1:210569747..210575327,18	MCF-7	breast:
7	chr1:210565121..210568359-chr1:210572172..210574144,3	K562	blood:
8	chr1:210551526..210553574-chr1:210572140..210575060,2	K562	blood:
9	chr1:210546689..210549252-chr1:210570902..210574338,5	K562	blood:
10	chr1:210533311..210536589-chr1:210572457..210575177,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction
ENSG00000054392	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033492	0.90[EUR][1000 genomes]
rs12070523	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12082200	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12085633	0.90[EUR][1000 genomes]
rs12143445	0.81[ASN][1000 genomes]
rs12411194	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17016068	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073038	0.92[AMR][1000 genomes]
rs3753229	0.90[AMR][1000 genomes]
rs4845007	0.81[ASN][1000 genomes]
rs4845008	0.81[ASN][1000 genomes]
rs4845009	0.81[ASN][1000 genomes]
rs4845012	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381238	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72745442	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72745456	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
7	chr1:210568800-210573800	Weak transcription	Osteobl	bone
8	chr1:210569200-210573600	Weak transcription	HepG2	liver
9	chr1:210569400-210573600	Weak transcription	Right Ventricle	heart
10	chr1:210570200-210573400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
12	chr1:210570400-210574400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:210571200-210573800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:210571200-210573800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:210571200-210573800	Weak transcription	Right Atrium	heart
16	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
17	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:210571400-210573600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:210571400-210573800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:210571400-210574200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:210571400-210591400	Weak transcription	Ovary	ovary
22	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:210571800-210573400	Weak transcription	HSMM	muscle
24	chr1:210571800-210573800	Weak transcription	HSMMtube	muscle
25	chr1:210572600-210573600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:210572600-210574000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr1:210572600-210574000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr1:210572600-210574200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:210572800-210573800	Enhancers	NH-A	brain
30	chr1:210572800-210574000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr1:210572800-210574000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:210572800-210574200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:210573000-210574000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr1:210573000-210574000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr1:210573200-210573800	Enhancers	Primary T cells from cord blood	blood
36	chr1:210573200-210574000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:210573200-210574000	Enhancers	GM12878-XiMat	blood
38	chr1:210573200-210574000	Enhancers	HMEC	breast
39	chr1:210573200-210574200	Enhancers	NHEK	skin
40	chr1:210573200-210574400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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