Variant report

Variant	rs11119535
Chromosome Location	chr1:210709616-210709617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10779535	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10779536	0.92[ASN][1000 genomes]
rs10779537	0.92[ASN][1000 genomes]
rs10863842	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10863843	0.84[ASN][1000 genomes]
rs11119527	0.88[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs11119536	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119537	0.94[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs11119539	0.82[ASN][1000 genomes]
rs12029929	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12033957	0.93[ASN][1000 genomes]
rs12034950	0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12075603	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12079415	0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12125970	0.87[ASN][1000 genomes]
rs12126012	0.91[ASN][1000 genomes]
rs12403873	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12404948	0.86[ASN][1000 genomes]
rs12405221	0.85[ASN][1000 genomes]
rs17016393	0.83[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016397	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs17016400	0.83[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2069151	0.89[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2069153	0.87[ASN][1000 genomes]
rs2069154	0.84[ASN][1000 genomes]
rs2069155	0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4845044	0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4845045	0.94[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4845046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4845047	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4845048	0.83[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4845049	0.83[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4845050	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4845051	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4845052	0.81[AMR][1000 genomes]
rs4845053	0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv549106	chr1:210698719-210736508	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1011702	chr1:210706323-210739030	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv988198	chr1:210707300-210716552	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210680600-210731000	Weak transcription	HSMM	muscle
3	chr1:210708200-210710200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:210708200-210711000	Enhancers	HSMMtube	muscle
5	chr1:210708400-210710000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:210708400-210710000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:210708400-210710000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:210708400-210710200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:210708400-210710400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:210708600-210710000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:210708600-210710200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:210708600-210710200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:210708600-210710400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:210708600-210710400	Enhancers	Fetal Brain Male	brain
15	chr1:210708800-210709800	Enhancers	Brain Germinal Matrix	brain
16	chr1:210708800-210710200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:210708800-210710400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:210708800-210710400	Enhancers	Fetal Muscle Leg	muscle
19	chr1:210708800-210710600	Enhancers	Fetal Heart	heart
20	chr1:210709000-210710000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:210709000-210710000	Enhancers	Fetal Brain Female	brain
22	chr1:210709000-210710200	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:210709000-210710400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:210709200-210709800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr1:210709200-210710200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:210709200-210710400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:210709200-210710600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:210709200-210710800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr1:210709400-210710000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:210709400-210715200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:210709600-210710000	Enhancers	Brain Substantia Nigra	brain
32	chr1:210709600-210710200	Enhancers	Brain Angular Gyrus	brain
33	chr1:210709600-210710800	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links