Variant report

Variant	rs11119717
Chromosome Location	chr1:211446712-211446713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211440590..211444196-chr1:211446401..211448138,3	K562	blood:
2	chr1:211444425..211446748-chr1:211449200..211451124,2	K562	blood:
3	chr1:211442539..211444623-chr1:211446547..211448204,3	K562	blood:
4	chr1:211445921..211449988-chr1:211451862..211456594,5	K562	blood:
5	chr1:211430511..211432103-chr1:211446365..211449006,2	MCF-7	breast:
6	chr1:211444424..211446748-chr1:211449200..211451604,3	K562	blood:
7	chr1:211432286..211434282-chr1:211444743..211447086,2	K562	blood:
8	chr1:211445523..211448200-chr1:211451354..211453248,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10458470	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs10494935	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs10779551	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119711	0.91[ASN][1000 genomes]
rs11119714	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11119725	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11119733	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs11119738	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs11119740	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs12028306	0.84[EUR][1000 genomes]
rs12032988	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12035966	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs12039683	1.00[CEU][hapmap]
rs12039915	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs12041794	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042216	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12046975	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12065190	0.84[EUR][1000 genomes]
rs12080561	0.84[EUR][1000 genomes]
rs12085730	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs12095365	0.84[ASN][1000 genomes]
rs17017360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17017401	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2175633	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs2289758	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs3738201	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs3738202	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs4540732	0.85[ASN][1000 genomes]
rs4951521	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs58164259	0.84[EUR][1000 genomes]
rs58510761	0.84[EUR][1000 genomes]
rs59019096	0.97[ASN][1000 genomes]
rs6540679	0.83[JPT][hapmap]
rs6663729	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs6698113	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs6698191	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs9887769	0.94[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
2	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
3	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211434400-211487000	Weak transcription	Gastric	stomach
5	chr1:211434600-211449200	Weak transcription	Colonic Mucosa	Colon
6	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
7	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
8	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:211434800-211453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:211434800-211453400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:211434800-211462600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:211434800-211464800	Weak transcription	Right Ventricle	heart
14	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:211435600-211447800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:211435600-211460800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:211435800-211449000	Weak transcription	GM12878-XiMat	blood
18	chr1:211436200-211456800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:211437000-211454600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:211437200-211448000	Strong transcription	Fetal Intestine Large	intestine
21	chr1:211437800-211451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:211438800-211478800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:211439800-211478200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:211440000-211458200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:211440400-211448200	Strong transcription	Fetal Thymus	thymus
26	chr1:211440600-211448600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:211440600-211449200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:211440600-211454400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:211440800-211481800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr1:211440800-211483600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr1:211441000-211448800	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:211441200-211461200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:211442400-211447800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:211443000-211446800	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:211443000-211480000	Strong transcription	Dnd41	blood
36	chr1:211443000-211480400	Strong transcription	Placenta	Placenta
37	chr1:211443200-211460800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr1:211443200-211484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:211443600-211454400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:211443800-211447800	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:211443800-211460400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr1:211443800-211478200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:211444200-211459400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:211444400-211446800	Strong transcription	Primary T cells from cord blood	blood
45	chr1:211444400-211454000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:211444400-211479000	Strong transcription	Liver	Liver
47	chr1:211444600-211446800	Strong transcription	HepG2	liver
48	chr1:211444600-211447800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:211444600-211447800	Strong transcription	Brain Anterior Caudate	brain
50	chr1:211444600-211447800	Strong transcription	Duodenum Mucosa	Duodenum

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