The 2.0 version of rSNPBase

Variant report

Variant rs11119727
Chromosome Location chr1:211503161-211503162
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211500400-211504000 Flanking Active TSS Primary B cells from cord blood blood
2 chr1:211500800-211503600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
3 chr1:211500800-211503600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
4 chr1:211500800-211503600 Flanking Active TSS Duodenum Mucosa Duodenum
5 chr1:211501000-211503400 Flanking Active TSS Primary B cells from peripheral blood blood
6 chr1:211501000-211503400 Enhancers Cortex derived primary cultured neurospheres brain
7 chr1:211501000-211503400 Flanking Active TSS Stomach Smooth Muscle stomach
8 chr1:211501000-211503600 Flanking Active TSS Primary T cells fromperipheralblood blood
9 chr1:211501000-211503600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
10 chr1:211501000-211503600 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
11 chr1:211501000-211504000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:211501200-211503200 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:211501200-211503200 Weak transcription Small Intestine intestine
14 chr1:211501200-211503400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:211501200-211503800 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr1:211501200-211504000 Weak transcription H9 Cell Line embryonic stem cell
17 chr1:211501200-211504000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
18 chr1:211501200-211504200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
19 chr1:211501200-211504200 Enhancers Esophagus oesophagus
20 chr1:211501200-211504200 Enhancers Placenta Placenta
21 chr1:211501200-211505400 Weak transcription Brain Angular Gyrus brain
22 chr1:211501200-211505400 Weak transcription Brain Hippocampus Middle brain
23 chr1:211501200-211509200 Weak transcription Fetal Kidney kidney
24 chr1:211501200-211511000 Enhancers Stomach Mucosa stomach
25 chr1:211501200-211515200 Enhancers Sigmoid Colon Sigmoid Colon
26 chr1:211501400-211503200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:211501400-211503400 Enhancers Fetal Muscle Leg muscle
28 chr1:211501400-211503600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:211501400-211503800 Weak transcription Fetal Intestine Small intestine
30 chr1:211501400-211504200 Enhancers Primary hematopoietic stem cells blood
31 chr1:211501400-211505200 Weak transcription Psoas Muscle Psoas
32 chr1:211501400-211505400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:211501400-211505400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:211501400-211505400 Weak transcription HUVEC blood vessel
35 chr1:211501400-211505600 Weak transcription A549 lung
36 chr1:211501400-211505800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:211501400-211506200 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr1:211501600-211503400 Enhancers Fetal Thymus thymus
39 chr1:211501600-211503800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr1:211501600-211504200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr1:211501600-211504400 Flanking Active TSS GM12878-XiMat blood
42 chr1:211501600-211504600 Enhancers Gastric stomach
43 chr1:211501600-211505200 Enhancers HUES64 Cell Line embryonic stem cell
44 chr1:211501600-211506600 Enhancers Colon Smooth Muscle Colon
45 chr1:211501800-211503200 Enhancers Right Ventricle heart
46 chr1:211501800-211503400 Enhancers Ovary ovary
47 chr1:211501800-211503600 Enhancers Skeletal Muscle Male skeletal muscle
48 chr1:211501800-211503800 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:211501800-211504000 Weak transcription Osteobl bone
50 chr1:211501800-211505000 Enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015