Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12202740	0.80[AMR][1000 genomes]
rs12205058	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1319624	0.80[AMR][1000 genomes]
rs1615022	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1615828	0.82[AMR][1000 genomes]
rs1622964	0.83[AMR][1000 genomes]
rs1686317	0.82[AMR][1000 genomes]
rs1686318	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1760649	0.84[AMR][1000 genomes]
rs1760658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1767853	0.84[AMR][1000 genomes]
rs1931283	0.81[AMR][1000 genomes]
rs2635111	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2635115	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2781175	0.82[AMR][1000 genomes]
rs2781209	0.80[AMR][1000 genomes]
rs2781210	0.83[AMR][1000 genomes]
rs2788972	0.83[AMR][1000 genomes]
rs763672	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7758470	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7773856	0.83[EUR][1000 genomes]
rs9352088	0.84[CHB][hapmap]
rs9352089	0.83[CHB][hapmap]
rs9360767	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3370657	chr6:74930732-74935030	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3509793	chr6:74932007-74934080	Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74932200-74933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: