Variant report

Variant	rs11120571
Chromosome Location	chr1:215519345-215519346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10465665	1.00[EUR][1000 genomes]
rs10864176	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120555	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120556	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11120570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120573	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120574	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12061570	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095159	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095391	1.00[YRI][hapmap]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374655	1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	1.00[EUR][1000 genomes]
rs17024391	1.00[EUR][1000 genomes]
rs17024751	1.00[EUR][1000 genomes]
rs17024855	1.00[EUR][1000 genomes]
rs1911547	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082521	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4265403	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs56799360	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57501351	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	1.00[EUR][1000 genomes]
rs61070702	1.00[EUR][1000 genomes]
rs61272547	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678266	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690170	1.00[EUR][1000 genomes]
rs6695816	1.00[EUR][1000 genomes]
rs73091976	1.00[EUR][1000 genomes]
rs73091981	1.00[EUR][1000 genomes]
rs73091996	1.00[EUR][1000 genomes]
rs7516768	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014878	chr1:215453286-215527616	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003660	chr1:215453286-215529747	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1009296	chr1:215498152-215520123	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215517200-215519400	Enhancers	Fetal Lung	lung
2	chr1:215517400-215519600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215518400-215520200	Weak transcription	Right Atrium	heart
4	chr1:215519000-215519400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links